End-to-end simulation of nanopore sequencing signals with feed-forward transformers

A from-scratch experimental AOT JS engine, written in JS

crab go snap snap

Visualise and analyse nanopore (ONT) raw signals

Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports

Genome browser and variant annotation

Calibration library and code for the paper: Verified Uncertainty Calibration. Ananya Kumar, Percy Liang, Tengyu Ma. NeurIPS 2019 (Spotlight).

PLS regression algorithm

A new markup-based typesetting system that is powerful and easy to learn.

You like pytorch? You like micrograd? You love tinygrad! ❤️

Tiny cross-platform webview library for C/C++. Uses WebKit (GTK/Cocoa) and Edge WebView2 (Windows).

Sturgeon is a CNS neural network classifier

The sassy UML diagram renderer

Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).

long read RNA-seq quantification

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

The modern replacement for Jupyter Notebooks

TCR and BCR assembly from RNA-seq data

A program for the analysis of single cell nanopore long read data

The complete sequence of a human genome

Chromosome visualization for the web

Classifier for metagenomic sequences using FM-index with run-block compressed BWT.

A copilot for your terminal

NGINX Unit - universal web app server - a lightweight and versatile open source server that simplifies the application stack by natively executing application code across eight different programmin…

The Flexible Demultiplexer

🖼️ Create beautiful maps from OpenStreetMap data in a streamlit webapp

SingleCell Nanopore sequencing data analysis

Bioinformatics I/O libraries in Rust