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1. Tools-for-Omics-Analysis Tools-for-Omics-Analysis Public

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2. gtf_to_csv.R gtf_to_csv.R

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   rm(list=ls())

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   library(GenomicFeatures)

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   library(rtracklayer)

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   extractGenesOfGTF <- function(inputFile, outputGTF_File, outputCsvFile ) {

3. TCGA metadata - To get the read leng... TCGA metadata - To get the read length, to check whether all the samples are paired-end and to get all other information for TCGA samples

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   library(GenomicDataCommons)

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   q = files() %>% 

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     filter(~ cases.project.project_id == 'TCGA-LIHC' & 

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              data_type == 'Aligned Reads' & 

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              experimental_strategy == 'WXS' &