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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 67 32

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 122 27

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 40 7

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 30 12

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 7 6

Repositories

Showing 10 of 98 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 2 3 3 0 Updated Jun 30, 2024
  • taxPProValidation Public

    Code for validation analyses for prediction of annotations in bugphyzz

    waldronlab/taxPProValidation’s past year of commit activity
    R 0 0 0 0 Updated Jun 28, 2024
  • bugphyzzAnalyses Public

    Analyses with data and signatures imported from the bugphyzz package.

    waldronlab/bugphyzzAnalyses’s past year of commit activity
    R 1 1 0 0 Updated Jun 28, 2024
  • bugphyzz Public

    Harmonized annotation of microbial physiology

    waldronlab/bugphyzz’s past year of commit activity
    R 3 5 5 0 Updated Jun 27, 2024
  • bugphyzzExports Public
    waldronlab/bugphyzzExports’s past year of commit activity
    R 0 1 1 0 Updated Jun 27, 2024
  • lefser Public

    R implementation of the LEfSe method

    waldronlab/lefser’s past year of commit activity
    R 35 6 5 1 Updated Jun 26, 2024
  • ASAP_MAC Public
    waldronlab/ASAP_MAC’s past year of commit activity
    0 0 0 0 Updated Jun 26, 2024
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 1 0 1 0 Updated Jun 19, 2024
  • presentations Public

    A repository for public presentations

    waldronlab/presentations’s past year of commit activity
    TeX 6 CC0-1.0 9 1 0 Updated Jun 19, 2024
  • SingleCellMultiModal Public

    Single Cell multimodal data scripts for downloading datasets

    waldronlab/SingleCellMultiModal’s past year of commit activity
    R 17 9 1 0 Updated Jun 18, 2024
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