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Commits on Aug 22, 2018

• add helper function: help_pack_genes_for_download.py

  wdingx

  committedAug 22, 2018
  9212f3d

Commits on Aug 17, 2018

• add helper function help_concatenate-core-alignments.py

  wdingx

  committedAug 17, 2018
  5c1baf9

Commits on Aug 7, 2018

• update:readme

  wdingx

  committedAug 7, 2018
  c4ea711

Commits on Jul 19, 2018

• add helper_function to convert geneCluster.json into csv

  wdingx

  committedJul 19, 2018
  fe47e91

Commits on Jul 2, 2018

• add unicode to str types in translation check

  rneher

  committedJul 2, 2018
  1be34bd

• remove io import

  rneher

  committedJul 2, 2018
  2706029

Commits on Jun 12, 2018

• update:readme

  wdingx

  committedJun 12, 2018
  0a391eb

• update:readme

  wdingx

  committedJun 12, 2018
  eaf5b03

Commits on May 22, 2018

• update dateutil

  wdingx

  committedMay 22, 2018
  aead203

Commits on Mar 21, 2018

• update readme

  wdingx

  committedMar 21, 2018
  61d013d

• Merge pull request #4 from bebatut/remove_treetime

  wdingx

  committedMar 21, 2018
  d6f9b56

Commits on Mar 16, 2018

• use raw name when no binomial nomenclature is found

  wdingx

  committedMar 16, 2018
  5cbd58d

Commits on Feb 2, 2018

• checking strains which have no CDS

  wdingx

  committedFeb 2, 2018
  f634deb

Commits on Dec 9, 2017

• check diamond

  wdingx

  committedDec 9, 2017
  b282589

• add version

  wdingx

  committedDec 9, 2017
  bab86dd

• Merge branch 'master' of github.com:neherlab/pan-genome-analysis

  wdingx

  committedDec 9, 2017
  1e2bf4c

• update readme

  wdingx

  committedDec 9, 2017
  9d21379

Commits on Dec 8, 2017

• readme

  wdingx

  committedDec 8, 2017
  3234095

• use only 4 strains in test set

  wdingx

  committedDec 8, 2017
  4bc75c9

• Update Readme

  wdingx

  committedDec 8, 2017
  fe1f063

• Update Readme

  wdingx

  committedDec 8, 2017
  2e9aa15

• Merge pull request #3 from bebatut/diamond

  wdingx

  committedDec 8, 2017
  89d2143

• Replace treetime submodule by conda one

  bebatut

  committedDec 8, 2017
  2ff20ed

• Use diamond installed with conda

  bebatut

  committedDec 8, 2017
  e422c75

Commits on Dec 4, 2017

• add country2region.tsv

  wdingx

  committedDec 4, 2017
  e609ec8

• add region information for countries in country2region.tsv

  wdingx

  committedDec 4, 2017
  606bf23

• add parameter metainfo_reconcile

  wdingx

  committedDec 4, 2017
  aa9ae01

Commits on Nov 19, 2017

• add host_synonym

  wdingx

  committedNov 19, 2017
  ac7f4e9

• check meta value (log)

  wdingx

  committedNov 19, 2017
  a44c0c5

Commits on Nov 5, 2017

• add association_columns for metaConfiguration.js

  wdingx

  committedNov 5, 2017
  c3b69ae

Commits on Nov 4, 2017

• update gzip

  wdingx

  committedNov 4, 2017
  c9707d8

• update file path for association calculation

  wdingx

  committedNov 4, 2017
  7575589

• update filename for meta_config

  wdingx

  committedNov 4, 2017
  73d80d5

Commits on Oct 26, 2017

• mv strain_tree.nwk

  wdingx

  committedOct 26, 2017
  a2f8853

Commits on Oct 5, 2017

• record command lines for rRNAs

  wdingx

  committedOct 5, 2017
  9b0e0e2

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