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UFISH-Team/U-FISH
UFISH-Team/U-FISH PublicDeep learning based spot detection for FISH images.
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Spatialspots
Spatialspots PublicThis document explains how to use three functions to calculate kernel density estimation (KDE), Moran's I statistic, Correlation, Wasserstein distance.
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SpatiaInSituPlots
SpatiaInSituPlots PublicSpatial InSitu plot including gene expression and cell type
Jupyter Notebook 2
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MicroimageAnalysis
MicroimageAnalysis Publicmeasure fluorescence intensities of Hoechst and CENP-F in the nuclei
Jupyter Notebook
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SpatialImmunoCircle
SpatialImmunoCircle PublicComputing spatial variations around specific cell clusters in the immune microenvironment
Jupyter Notebook 1
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