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Merge pull request NifTK#405 from NifTK/142-csv_reader-nnhack
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142 csv reader nnhack
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wyli committed Oct 7, 2019
2 parents 4bc6126 + e17ae12 commit ddf7767
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2 changes: 2 additions & 0 deletions .gitignore
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Expand Up @@ -18,6 +18,8 @@ testing_data*
*.swp
data/brain_parcellation/OASIS
data/u-net
data/csv_data
data/._csv_data
dist
build
*.egg-info
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5 changes: 4 additions & 1 deletion .gitlab-ci.yml
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Expand Up @@ -56,7 +56,8 @@ testjob:
- mkdir -p testing_data
- tar -xzvf testing_data_v0_3.tar.gz -C testing_data
- tar -xzvf testing_code_v0_3.tar.gz -C testing_data

- wget -N https://www.dropbox.com/s/gt0hm6o61rlsfcc/csv_data.tar.gz
- tar -C data -xzvf csv_data.tar.gz

#### python 2 tests ###################################
# save NiftyNet folder path just in case
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- wget -q https://www.dropbox.com/s/5p5fdgy053tgmdj/testing_data_v0_3.tar.gz
- mkdir -p testing_data
- tar -xzvf testing_data_v0_3.tar.gz -C testing_data
- wget -N https://www.dropbox.com/s/gt0hm6o61rlsfcc/csv_data.tar.gz
- tar -C data -xzvf csv_data.tar.gz

######### Python 2 ###################### run python2 code with coverage wrapper
# save NiftyNet folder path just in case
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -44,8 +44,8 @@ HIG -- High-dimensional Imaging Group, UCL), where BMEIS acts as the consortium
### Installation

1. Please install the appropriate [TensorFlow][tf] package*:
* [`pip install "tensorflow-gpu>=1.13.2,<2.0"`][tf-pypi-gpu] for TensorFlow with GPU support
* [`pip install "tensorflow>=1.13.2,<2.0"`][tf-pypi] for CPU-only TensorFlow
* [`pip install "tensorflow-gpu>=1.13.2, <=1.14"`][tf-pypi-gpu] for TensorFlow with GPU support
* [`pip install "tensorflow>=1.13.2, <=1.14"`][tf-pypi] for CPU-only TensorFlow
1. [`pip install niftynet`](https://pypi.org/project/NiftyNet/)

<sup>All other NiftyNet dependencies are installed automatically as part of the pip installation process.
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