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scRNA.seq.course Public
Forked from hemberg-lab/scRNA.seq.courseAnalysis of single cell RNA-seq data course
TeX GNU General Public License v3.0 UpdatedDec 11, 2020 -
scvelo Public
Forked from theislab/scveloRNA Velocity generalized through dynamical modeling
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 9, 2020 -
STAR-Fusion Public
Forked from STAR-Fusion/STAR-FusionSTAR-Fusion codebase
Perl BSD 3-Clause "New" or "Revised" License UpdatedNov 23, 2020 -
gtfparse Public
Forked from openvax/gtfparseParsing tools for GTF (gene transfer format) files
Python Apache License 2.0 UpdatedNov 16, 2020 -
long-read-rna-pipeline Public
Forked from ENCODE-DCC/long-read-rna-pipelineENCODE long read RNA-seq pipeline
WDL MIT License UpdatedOct 8, 2020 -
scikit-learn Public
Forked from scikit-learn/scikit-learnscikit-learn: machine learning in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 2, 2020 -
SnapATAC Public
Forked from r3fang/SnapATACAnalysis Pipeline for Single Cell ATAC-seq
R GNU General Public License v3.0 UpdatedSep 24, 2020 -
EnhancedVolcano Public
Forked from kevinblighe/EnhancedVolcanoPublication-ready volcano plots with enhanced colouring and labeling
R UpdatedAug 23, 2020 -
Spermatogenesis Public
Forked from SangrithiLab/SpermatogenesisAnalysis of scRNA-seq datasets of macaque, human and mouse.
HTML UpdatedAug 22, 2020 -
mgatk Public
Forked from caleblareau/mgatkmgatk: mitochondrial genome analysis toolkit
Python MIT License UpdatedAug 20, 2020 -
dataviz Public
Forked from clauswilke/datavizA book covering the fundamentals of data visualization
HTML Other UpdatedAug 20, 2020 -
VplotR Public
Forked from js2264/VplotRR package to easily generate "V-plots" of paired-end sequencing data over regions of interest
R UpdatedAug 14, 2020 -
find_circ Public
Forked from marvin-jens/find_circtools to find circRNAs in RNA-seq data
Python GNU General Public License v3.0 UpdatedJul 26, 2020 -
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sports1.1 Public
Forked from junchaoshi/sports1.1Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
Perl GNU General Public License v3.0 UpdatedJun 11, 2020 -
atacseq-workflow Public
Forked from weng-lab/atacseq-workflowThe ENCODE DCC ATAC-seq pipeline, adapted for Krews
Python UpdatedJun 9, 2020 -
PCAtools Public
Forked from kevinblighe/PCAtoolsPCAtools: everything Principal Components Analysis
R UpdatedJun 6, 2020 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
Nextflow MIT License UpdatedMay 29, 2020 -
composite-mutations Public
Forked from taylor-lab/composite-mutationsCompanion code to the paper "Phase and context shapes the function of composite oncogenic mutations"
R UpdatedMay 27, 2020 -
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Scripts-1 Public
Forked from enormandeau/ScriptsCollection of various scripts
Python GNU General Public License v3.0 UpdatedMay 26, 2020 -
tx_annotation Public
Forked from macarthur-lab/tx_annotationCode associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation"
Python UpdatedMay 26, 2020 -
lncRNA-pipeline Public
Forked from czheluo/lncRNA-pipelinelncRNA analysis pipeline
Perl UpdatedMay 25, 2020 -
sns Public
Forked from igordot/snsanalysis pipelines for sequencing data
Shell MIT License UpdatedMay 23, 2020 -
Circos-Pipeline Public
Forked from czheluo/Circos-Pipelinecircos pipeline
Perl UpdatedMay 22, 2020 -
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rna-seq-pipeline Public
Forked from ENCODE-DCC/rna-seq-pipelinePython MIT License UpdatedMay 20, 2020 -
Python-Data-Science-Handbook Public
Forked from wangyingsm/Python-Data-Science-HandbookA Chinese translation of Jake Vanderplas' "Python Data Science Handbook". 《Python数据科学手册》在线Jupyter notebook中文翻译
Jupyter Notebook GNU General Public License v2.0 UpdatedMay 18, 2020 -