Update R-CMD-check.yml

xsswang · Nov 9, 2022 · 8fcaa2d · 8fcaa2d
1 parent d2708ba
commit 8fcaa2d
Showing 1 changed file with 79 additions and 70 deletions.
diff --git a/.github/workflows/R-CMD-check.yml b/.github/workflows/R-CMD-check.yml
@@ -1,10 +1,8 @@
 on:
   push:
-    branches:
-      - main
+    branches: [main, master]
   pull_request:
-    branches:
-      - main
+    branches: [main, master]
 
 name: R-CMD-check
 
@@ -21,50 +19,44 @@ jobs:
         config:
           - {os: macOS-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest, r: 'release'}
-          - {os: ubuntu-latest, r: 'oldrel-1'}
+          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,  r: 'release'}
+          - {os: ubuntu-latest,  r: 'oldrel-1'}
 
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       RSPM: ${{ matrix.config.rspm }}
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
 
     steps:
       - uses: actions/checkout@v2
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
           http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
 
-      - uses: r-lib/actions/setup-pandoc@v1
-
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        if: runner.os != 'Windows'
-        uses: actions/cache@v1
-        with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        run: |
-          while read -r cmd
-          do
-            eval sudo $cmd
-          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "16.04"), sep = "\n")')
+      # - name: Query dependencies
+      #   run: |
+      #     install.packages('remotes')
+      #     saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+      #     writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+      #   shell: Rscript {0}
+      #
+      # - name: Cache R packages
+      #   if: runner.os != 'Windows'
+      #   uses: actions/cache@v1
+      #   with:
+      #     path: ${{ env.R_LIBS_USER }}
+      #     key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+      #     restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
       - name: Install JAGS macOS
         if: runner.os == 'macOS'
@@ -74,50 +66,67 @@ jobs:
 
       - name: Download JAGS Windows
         if: runner.os == 'Windows'
-        run: (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.0.exe', 'C:\JAGS-4.3.0.exe')
+        run: (New-Object System.Net.WebClient).DownloadFile('https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Windows/JAGS-4.3.1.exe', 'C:\JAGS-4.3.1.exe')
         shell: powershell
 
       - name: Install JAGS Windows
         if: runner.os == 'Windows'
-        run: C:\JAGS-4.3.0.exe /S
+        run: C:\JAGS-4.3.1.exe /S
         shell: cmd
 
-
-      - name: Install dependencies
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
         run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-        shell: Rscript {0}
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
 
-      - name: Session info
-        run: |
-          options(width = 100)
-          pkgs <- installed.packages()[, "Package"]
-          sessioninfo::session_info(pkgs, include_base = TRUE)
-        shell: Rscript {0}
-
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_: false
-          _R_CHECK_FORCE_SUGGESTS_: false
-          _R_CHECK_SYSTEM_CLOCK_: false
-          IS_CHECK: true
-        run: |
-          os = .Platform$OS.type
-          if (os == "windows" & R.version$major == 3) {remotes::install_version("rjags", version = "4-13")}
-          jagshome = if (os == "windows") {readRegistry("SOFTWARE\\JAGS", maxdepth = 2, view = "32-bit")}
-          if (os == "windows"){Sys.setenv(JAGS_HOME = try(jagshome[["JAGS-4.3.0"]][["InstallDir"]]))}
-          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran","--ignore-vignettes"), build_args = c("--no-manual","--no-build-vignettes"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
-
-      - name: Show testthat output
-        if: always()
-        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@main
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
         with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check
+          upload-snapshots: true
+
+      # - name: Install dependencies
+      #   run: |
+      #     remotes::install_deps(dependencies = TRUE)
+      #     remotes::install_cran("rcmdcheck")
+      #   shell: Rscript {0}
+
+      # - name: Session info
+      #   run: |
+      #     options(width = 100)
+      #     pkgs <- installed.packages()[, "Package"]
+      #     sessioninfo::session_info(pkgs, include_base = TRUE)
+      #   shell: Rscript {0}
+
+      # - name: Check
+      #   env:
+      #     _R_CHECK_CRAN_INCOMING_: false
+      #     _R_CHECK_FORCE_SUGGESTS_: false
+      #     _R_CHECK_SYSTEM_CLOCK_: false
+      #     IS_CHECK: true
+      #   run: |
+      #     os = .Platform$OS.type
+      #     if (os == "windows" & R.version$major == 3) {remotes::install_version("rjags", version = "4-10")}
+      #     jagshome = if (os == "windows") {readRegistry("SOFTWARE\\JAGS", maxdepth = 2, view = "32-bit")}
+      #     if (os == "windows"){Sys.setenv(JAGS_HOME = try(jagshome[["JAGS-4.3.0"]][["InstallDir"]]))}
+      #     rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), build_args = "--no-manual", error_on = "warning", check_dir = "check")
+      #   shell: Rscript {0}
+
+      # - name: Show testthat output
+      #   if: always()
+      #   run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
+      #   shell: bash
+      #
+      # - name: Upload check results
+      #   if: failure()
+      #   uses: actions/upload-artifact@main
+      #   with:
+      #     name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+      #     path: check