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Fix #370
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20.04 (focal) base image --> sed 4.7.1 even after upgrade
24.04 (jammy) base image --> usher fails to build
22.04 as the base image builds and installs sed 4.8
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aofarrel committed Oct 9, 2024
1 parent 6d2799c commit 046134d
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions install/Dockerfile
Original file line number Diff line number Diff line change
@@ -1,11 +1,13 @@
FROM ubuntu:20.04
FROM ubuntu:22.04
ENV APT_KEY_DONT_WARN_ON_DANGEROUS_USAGE=DontWarn
ENV DEBIAN_FRONTEND=noninteractive
USER root
RUN apt-get update && apt-get install -yq --no-install-recommends \
git wget \
ca-certificates \
sudo python3 python3-pip
RUN apt-get upgrade -y sed
# faSomeRecords and faSize are needed for the UShER WDL workflow
WORKDIR /HOME/kentsource
RUN wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faSomeRecords
RUN wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faSize
Expand All @@ -16,6 +18,5 @@ WORKDIR usher
## Checkout latest release
#RUN git checkout $(git describe --tags `git rev-list --tags --max-count=1`)
RUN ./install/installUbuntu.sh
# faSomeRecords and faSize are needed for the UShER WDL workflow
## set the path
ENV PATH="/HOME/usher/build:/HOME/kentsource:${PATH}"

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