Release 2.0.0

Overview of changes in version 2

Version 2 of tidytcells comes with several breaking changes:

• Renaming of submodules (this was done in order to make the software consistently IMGT-compliant)
  • The tcr submodule is now tr
  • The mhc submodule is now mh
• Deprecations of functions
  • tidytcells.mh.classify is now deprecated in favour of tidytcells.mh.get_class
• Deprecation of function parameters
  • The legacy parameter gene_name is now deprecated in favour of gene in the following functions:
    • tidytcells.mh.get_chain
    • tidytcells.mh.get_class
    • tidytcells.mh.standardize
    • tidytcells.tr.standardize
  • The parameter contains is now deprecated in favour of contains_pattern in the following functions:
    • tidytcells.mh.query
    • tidytcells.tr.query

What's Changed

• Develop by @yutanagano in #33
• Update function docstrings to reflect on_fail setting by @yutanagano in #36
• Develop by @yutanagano in #39
• Make cleaner code by @yutanagano in #41
• Update to version 2.0.0 by @yutanagano in #42

Full Changelog: v1.8.4...v2.0.0