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  • Children's Hospital of Philadelphia
  • Philadelphia

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Achievements

Achievement: Arctic Code Vault ContributorAchievement: Pull SharkAchievement: Starstruck

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  • zwdzwd.github.io Public

    HTML Updated Sep 2, 2024

  • sesame Public

    🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

    bioinformatics microarray dna-methylation
    R 57 31 Other Updated Aug 23, 2024

  • sesameData Public

    Supporting data for SeSAMe package

    R 8 Updated May 22, 2024

  • illuminaio Public

    Forked from HenrikBengtsson/illuminaio

    🔬 R package: This is the Bioconductor devel version of the illuminaio package.

    R Updated May 12, 2024

  • sesamize Public

    sesamize a minfi ratioSet or RGSet

    R 1 Updated May 4, 2023

  • transvar Public

    TransVar - multiway annotator for precision medicine

    Python 116 34 Other Updated Apr 19, 2023

  • wheatmap Public

    Complex Layout of Grid Graphics Made Simple

    R 10 1 Updated Feb 27, 2022

  • wzmetagene Public

    Create sub-intervals from intervals

    Python 2 1 MIT License Updated Jan 27, 2022

  • RnBeads Public

    Forked from epigen/RnBeads

    Git working Repo synced to the Bioconductor: http://bioconductor.org/packages/devel/bioc/html/RnBeads.html

    R Updated Jun 24, 2021

  • biscuiteer Public

    Forked from trichelab/biscuiteer

    tools for analysing Biscuit (https://github.com/zwdzwd/biscuit/wiki/Align-bisulfite-converted-reads) output

    R Other Updated Apr 22, 2020

  • workhorse Public

    Forked from MethylationWorkhorse/workhorse

    Core set of scripts to run Sesame pipeline workflow

    R Updated Jan 15, 2020

  • sesame_docker Public

    build docker image for sesame

    Dockerfile Updated Nov 17, 2019

  • InfiniumArrayAnnotation Public

    Collection of Infinium Array Annotation

    Updated Apr 6, 2019

  • utils Public

    some utility C code

    C 2 1 Apache License 2.0 Updated Mar 30, 2019

  • GDC_DNA_methylation_QC Public

    1 1 Updated Mar 6, 2019

  • miser Public

    Forked from ttriche/miser

    convenience package for loading IDATs off of GEO (short for "sesamizer")

    R Other Updated Feb 14, 2019

  • MultiQC Public

    Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Python GNU General Public License v3.0 Updated Aug 28, 2018

  • MultiQC_TestData Public

    Forked from MultiQC/test-data

    Test data for MultiQC. See https://github.com/ewels/MultiQC

    HTML MIT License Updated Jul 17, 2018

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell Updated Mar 14, 2018

  • sgsl Public

    A lightweight subset of GNU scientific library

    C 1 GNU General Public License v3.0 Updated Feb 9, 2018

  • PMD2017Analysis Public

    R Updated Jul 7, 2017

  • klib Public

    Forked from attractivechaos/klib

    A standalone and lightweight C library

    C Updated Jun 16, 2017

  • htslib Public

    Forked from samtools/htslib

    C library for high-throughput sequencing data formats

    C Other Updated May 23, 2017

  • quickunmap Public

    Get unmapped reads quickly

    C 1 MIT License Updated May 10, 2017

  • termdown Public

    Forked from trehn/termdown

    Countdown timer and stopwatch in your terminal

    Python GNU General Public License v3.0 Updated Apr 29, 2017

  • libsamtools0119 Public

    The old samtools code forked from samtools repo

    C Updated Dec 19, 2016

  • wzard Public

    my R utility functions

    R MIT License Updated Dec 14, 2016

  • blog Public

    HTML Updated Dec 5, 2016

  • r-source Public

    Forked from wch/r-source

    Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.

    R GNU General Public License v2.0 Updated Nov 9, 2016

  • testcode Public

    C Updated Oct 18, 2016