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@BV-BRC

Bacterial and Viral Bioinformatics Resource Center

Software repository for the Bacterial and Viral Bioinformatics Resource Center (BV-BRC) project.

The Bacterial and Viral Bioinformatics Resource Center (BV-BRC) is an information system designed to support the biomedical research community’s work on bacterial and viral infectious diseases via integration of vital pathogen information with rich data and analysis tools. BV-BRC combines the data, technology, and extensive user communities from two long-running centers: PATRIC, the bacterial system , and IRD/ViPR, the viral systems. In addition to hundreds of thousands of bacterial genomes in PATRIC and over a million viral genomes in IRD/ViPR, the two resources host data on protein structure and function, clinical studies, drug targets and resistance, epidemiology, and other features, and provide open source tools for data analysis and genomic annotation.

Learn more about BV-BRC.

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  1. BV-BRC-Web BV-BRC-Web Public

    The BV-BRC Web Application

    JavaScript 7 21

  2. BV-BRC-Docs BV-BRC-Docs Public

    The BV-BRC Documentation

    Python 3 9

  3. BV-BRC-CLI BV-BRC-CLI Public

    The BV-BRC Command Line Interface

    8 1

Repositories

Showing 10 of 72 repositories
  • p3_compare_regions Public

    PATRIC compare regions service

    BV-BRC/p3_compare_regions’s past year of commit activity
    Perl 0 1 0 0 Updated Jun 27, 2024
  • BV-BRC/p3_fqutils’s past year of commit activity
    Python 0 5 0 1 Updated Jun 27, 2024
  • bvbrc_standalone_apps Public

    Self-contained BVBRC backend service implementations.

    BV-BRC/bvbrc_standalone_apps’s past year of commit activity
    Perl 0 1 0 0 Updated Jun 27, 2024
  • BV-BRC/bvbrc_proteome_comparison’s past year of commit activity
    Perl 0 0 0 0 Updated Jun 27, 2024
  • BV-BRC/p3_assembly’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Jun 27, 2024
  • BV-BRC/codon_trees’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Jun 27, 2024
  • p3_mlst Public
    BV-BRC/p3_mlst’s past year of commit activity
    Perl 0 1 0 1 Updated Jun 27, 2024
  • p3_mauve Public
    BV-BRC/p3_mauve’s past year of commit activity
    JavaScript 0 MIT 5 0 2 Updated Jun 27, 2024
  • BV-BRC/bvbrc_rnaseq’s past year of commit activity
    Python 0 6 0 0 Updated Jun 27, 2024
  • comparative_systems_service Public

    Service to facilitate comparison of genomes using subsystems, pathways, and protein families

    BV-BRC/comparative_systems_service’s past year of commit activity
    Python 0 2 0 0 Updated Jun 27, 2024

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