Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

EVA-3494 Ingest assembly in batches #125

Merged
merged 13 commits into from
Feb 12, 2024
Merged

EVA-3494 Ingest assembly in batches #125

merged 13 commits into from
Feb 12, 2024

Commits on Feb 2, 2024

  1. ingest assembly in batches

    @nitin-ebi
    nitin-ebi committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    14915b2 View commit details
    Browse the repository at this point in the history

  2. put right batch

    @nitin-ebi
    nitin-ebi committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    2534ee2 View commit details
    Browse the repository at this point in the history

  3. fix transactional issue

    @nitin-ebi
    nitin-ebi committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    c631552 View commit details
    Browse the repository at this point in the history

  4. handle exception when ena assembly report is not found

    @nitin-ebi
    nitin-ebi committed Feb 2, 2024
    Configuration menu
    Copy the full SHA
    c0a851a View commit details
    Browse the repository at this point in the history

Commits on Feb 5, 2024

  1. manually reverting changes in case of failures

    @nitin-ebi
    nitin-ebi committed Feb 5, 2024
    Configuration menu
    Copy the full SHA
    dadb928 View commit details
    Browse the repository at this point in the history

Commits on Feb 9, 2024

  1. scheduled jobs for ena sequence name and md5 checksum retriever

    @nitin-ebi
    nitin-ebi committed Feb 9, 2024
    Configuration menu
    Copy the full SHA
    5515132 View commit details
    Browse the repository at this point in the history

  2. added endpoint to update ena sequence name and md5 checksum for multi… 

    …ple assemblies
    @nitin-ebi
    nitin-ebi committed Feb 9, 2024
    Configuration menu
    Copy the full SHA
    5ff968b View commit details
    Browse the repository at this point in the history

  3. prevent running multiple instances of job processing

    @nitin-ebi
    nitin-ebi committed Feb 9, 2024
    Configuration menu
    Copy the full SHA
    bd1b07c View commit details
    Browse the repository at this point in the history

Commits on Feb 11, 2024

  1. removed unused code, update old test and add new test

    @nitin-ebi
    nitin-ebi committed Feb 11, 2024
    Configuration menu
    Copy the full SHA
    b61f196 View commit details
    Browse the repository at this point in the history

Commits on Feb 12, 2024

  1. update rest api path

    @nitin-ebi
    nitin-ebi committed Feb 12, 2024
    Configuration menu
    Copy the full SHA
    92d1099 View commit details
    Browse the repository at this point in the history

  2. check if assembly exist before trying to update chromosomes in the as… 

    …sembly
    @nitin-ebi
    nitin-ebi committed Feb 12, 2024
    Configuration menu
    Copy the full SHA
    3d23017 View commit details
    Browse the repository at this point in the history

  3. review comments

    @nitin-ebi
    nitin-ebi committed Feb 12, 2024
    Configuration menu
    Copy the full SHA
    cb4f0f4 View commit details
    Browse the repository at this point in the history

  4. review comments - removing unused code

    @nitin-ebi
    nitin-ebi committed Feb 12, 2024
    Configuration menu
    Copy the full SHA
    530f623 View commit details
    Browse the repository at this point in the history