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  • GUniFrac Public

    Forked from cran/GUniFrac

    ❗ This is a read-only mirror of the CRAN R package repository. GUniFrac — Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data…

    R Updated Jan 4, 2024

  • microbiomeMarker Public

    Forked from yiluheihei/microbiomeMarker

    R package for microbiome biomarker discovery

    R 1 GNU General Public License v3.0 Updated Jul 13, 2023

  • R_pipeline_after_Qiime2 Public

    A fully tutorial after qiime2 based content in most papers

    5 1 Updated Jun 13, 2023

  • ggpicrust2 Public

    Forked from cafferychen777/ggpicrust2

    Make Picrust2 Output Analysis and Visualization Easier

    R Other Updated May 4, 2023

  • ggpie Public

    Forked from showteeth/ggpie

    ggpie - A ggplot2 extension to create pie, donut and rose pie plot

    R Other Updated Feb 17, 2023

  • glottoTrees Public

    Forked from erichround/glottoTrees

    Preparation of phylogenetic trees by adapting resources from glottolog.com

    R Creative Commons Attribution 4.0 International Updated Dec 19, 2022

  • RIdeogram Public

    Forked from TickingClock1992/RIdeogram
    R Updated Jul 26, 2022

  • ggClusterNet Public

    Forked from taowenmicro/ggClusterNet

    Microbial ecological network visualization clustering

    HTML Updated Jun 23, 2022

  • d3-sankey-diagram Public

    Forked from ricklupton/d3-sankey-diagram

    Sankey diagram for d3

    JavaScript MIT License Updated Jun 23, 2022

  • psych Public

    Forked from cran/psych

    ❗ This is a read-only mirror of the CRAN R package repository. psych — Procedures for Psychological, Psychometric, and Personality Research. Homepage: https://personality-project.org/r/psych/ https…

    R Updated Mar 19, 2022

  • CellTalkDB Public

    Forked from ZJUFanLab/CellTalkDB

    A manually curated database of literature-supported ligand-receptor interactions in human and mouse

    R GNU General Public License v3.0 Updated Mar 17, 2022

  • EasyStat Public

    Forked from taowenmicro/EasyStat

    EasyStat

    HTML Updated Jan 10, 2022

  • linkET Public

    Forked from Hy4m/linkET
    R Updated Jan 3, 2022

  • MultiOmicAnalysis Public

    Forked from SilentGene/MultiOmicAnalysis

    Genome-centric Multi-omic Analysis Workflow for the Marinimicrobia paper

    Shell Updated Dec 23, 2021

  • assembly_pipeline Public

    Forked from GeorgiaBreckell/assembly_pipeline
    Python Updated Nov 2, 2021

  • ggpmisc-1 Public

    Forked from aphalo/ggpmisc

    R package ggpmisc is an extension to ggplot2 and the Grammar of Graphics

    R Updated Oct 31, 2021

  • metaWRAP Public

    Forked from bxlab/metaWRAP

    MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

    Shell MIT License Updated Oct 28, 2021

  • pheatmap Public

    Forked from raivokolde/pheatmap

    Pretty heatmaps

    R Updated Oct 14, 2021

  • FEAST Public

    Forked from cozygene/FEAST

    Fast expectation maximization for microbial source tracking

    R Other Updated Aug 25, 2021

  • rstatix Public

    Forked from kassambara/rstatix

    Pipe-friendly Framework for Basic Statistical Tests in R

    R Updated May 22, 2021

  • mapchina Public

    Forked from xmc811/mapchina

    R Package of Geospatial Shapefile of China Administrative Divisions to the County/District-Level.

    R Updated Apr 25, 2021

  • keggmap Public

    ggplot2 to plot kegg pathway based on xml file

    R 6 1 GNU General Public License v2.0 Updated Apr 12, 2021

  • ggcor Public

    Forked from huazai-beyond121/gghpcc

    Extended tools for correlation analysis and visualization.

    R 1 Updated Mar 8, 2021

  • Vennerable Public

    Forked from js229/Vennerable

    Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries. It allows the display of area-weighted Venn diagrams and al…

    R Updated Jan 12, 2021

  • ggpattern Public

    Forked from trevorld/ggpattern

    ggplot geoms with pattern fills

    R MIT License Updated Dec 18, 2020

  • circlize Public

    Forked from jokergoo/circlize

    Circular visualization in R

    R Other Updated Dec 9, 2020

  • metacoder Public

    Forked from grunwaldlab/metacoder

    Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

    R Other Updated Dec 1, 2020

  • complex-upset Public

    Forked from krassowski/complex-upset

    A library for creating complex UpSet plots with ggplot2 geoms

    R MIT License Updated Nov 8, 2020

  • Maaslin2 Public

    Forked from biobakery/Maaslin2

    MaAsLin2: Microbiome Multivariate Association with Linear Models

    R Other Updated Nov 7, 2020

  • alluvial Public

    Forked from cran/alluvial

    ❗ This is a read-only mirror of the CRAN R package repository. alluvial — Alluvial Diagrams. Homepage: https://github.com/mbojan/alluvial Report bugs for this package: https://github.com/mbojan/all…

    R Other Updated Aug 28, 2020