-
Notifications
You must be signed in to change notification settings - Fork 20
Issues: RTXteam/RTX
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
Some new 'biolink:Gene' curies in KG2.5.2 have already been withdrawn by HGNC or NCBI
kg2
#1319
by chunyuma
was closed May 17, 2021
the URL in the message.result pulled back a JSON that doesn't match the result that was returned from ARAXQuery
#836
by chunyuma
was closed Jun 26, 2024
Throw an error when filter_kg removes all nodes of a particular qnode_id
bug
#845
by chunyuma
was closed Jul 14, 2020
Should we rebuild both COHD database and predict-drug-treats-disease database based on canonicalized kg2?
question
#1061
by chunyuma
was closed Sep 30, 2020
What knowledge providers do we use to count the total number of nodes with certain type in fisher exact test?
question
#1067
by chunyuma
was closed Sep 16, 2020
Create a function to check and download all databases which is always called when ARAX queries are run
question
#1099
by chunyuma
was closed Apr 29, 2021
Add Connections Hypothesis Provider (CHP) into our Expander
#1122
by chunyuma
was closed Mar 29, 2021
5 tasks done
A list of examples for improving NodeSynonymizer
conflation
node synonymizer
#1252
by chunyuma
was closed Feb 2, 2022
ARAX_query.py was successfully executed but returned empty message object to client
#735
by chunyuma
was closed May 13, 2020
Some 'biolink:ChemicalSubstance' nodes in KG2.5.2 don't have full name
kg2
question
#1296
by chunyuma
was closed Mar 16, 2021
The curies with prefix HMDB in kg2.5.2 are all converted to the curies with prefix PUBCHEM.COMPOUND in kg2.5.2c
bug
kg2c
#1321
by chunyuma
was closed Apr 29, 2021
Should the PathWhiz.NucleicAcid be assigned to
biolink:ChemicalSubstance
?
kg2
question
verify this fix in next KG2 build
#1322
by chunyuma
was closed Apr 26, 2021
Should we treat biolink:Metabolite as a drug for DTD?
question
#1323
by chunyuma
was closed Apr 29, 2021
Should KEGG:C00161 be treated as a synonym of CHEBI:35910?
merge miss
node synonymizer
question
#1327
by chunyuma
was closed Jun 26, 2024
Should CHEMBL.TARGET:CHEMBL4530 be an equivalent curie with UniProtKB:P00488?
#1350
by chunyuma
was closed Jun 26, 2024
Are these ENSEMBL gene ids invalid ids?
kg2
question
verify this fix in next KG2 build
#1361
by chunyuma
was closed Apr 23, 2021
We might lose around 537 human ENSEMBL genes in KG2.5.2?
kg2
verify this fix in next KG2 build
#1374
by chunyuma
was closed Apr 23, 2021
Do we lose some knowledge sources that might connect ~54K genes to other bioentities?
question
#1376
by chunyuma
was closed Apr 16, 2021
Levonorgestrel has two preferred nodes in kg2.5.2c
bug
kg2c
merge miss
node synonymizer
#1380
by chunyuma
was closed May 26, 2023
Previous Next
ProTip!
Type g i on any issue or pull request to go back to the issue listing page.