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Issues list

An error in kp_selector.py
#2252 by chunyuma was closed Mar 28, 2024
8
Retire DTD model in ARAX expand and ARAX overlay modules
#2091 by chunyuma was closed Aug 29, 2023
5
Questions about the creative mode of xCRG
#1959 by chunyuma was closed Feb 4, 2023
@saramsey @dkoslicki
@edeutsch @amykglen
8
A potential error in ARAX Overlay Jaccard Similarity module? Reasoning
#1934 by chunyuma was closed Apr 5, 2023
@dkoslicki @kvnthomas98
5
cicd.rtx.ai running out of space
#1899 by chunyuma was closed Apr 26, 2023
2
Modify CHP module in ARAX exapnder
#1653 by chunyuma was closed Sep 28, 2021
@chunyuma
3
FMA:264825 might have a wrong category node synonymizer
#1557 by chunyuma was closed Feb 2, 2022
5
ModuleNotFoundError: No module named 'openapi_server.models.one_ofobjectobject'
#1456 by chunyuma was closed May 11, 2021
3
Nodesynonymizer doesn't recognize some curies with both 2.5.2 version database and 2.6.3 version database node synonymizer
#1442 by chunyuma was closed May 26, 2023
@edeutsch
1
FET got negative values because the get_total_entity_count of Nodesynonymizer might be obsolete?
#1433 by chunyuma was closed May 6, 2021
@edeutsch @amykglen
6
Some issues found that might be associated with Nodesynonymizer from KG2.6.1 node synonymizer
#1425 by chunyuma was closed Jun 26, 2024
@edeutsch
5
Can we keep the longest description in KG2C? kg2c question
#1420 by chunyuma was closed Jul 9, 2021
30
Levonorgestrel has two preferred nodes in kg2.5.2c bug kg2c merge miss node synonymizer
#1380 by chunyuma was closed May 26, 2023
@edeutsch @amykglen
5
Do we lose some knowledge sources that might connect ~54K genes to other bioentities? question
#1376 by chunyuma was closed Apr 16, 2021
@saramsey @ecwood @kvarforl
52
We might lose around 537 human ENSEMBL genes in KG2.5.2? kg2 verify this fix in next KG2 build
#1374 by chunyuma was closed Apr 23, 2021
@ecwood @kvarforl
4
Are these ENSEMBL gene ids invalid ids? kg2 question verify this fix in next KG2 build
#1361 by chunyuma was closed Apr 23, 2021
@ecwood @kvarforl
11
Should CHEMBL.TARGET:CHEMBL4530 be an equivalent curie with UniProtKB:P00488?
#1350 by chunyuma was closed Jun 26, 2024
@edeutsch
5
Should KEGG:C00161 be treated as a synonym of CHEBI:35910? merge miss node synonymizer question
#1327 by chunyuma was closed Jun 26, 2024
@edeutsch @ecwood
11
Should we treat biolink:Metabolite as a drug for DTD? question
#1323 by chunyuma was closed Apr 29, 2021
3
Should the PathWhiz.NucleicAcid be assigned to biolink:ChemicalSubstance? kg2 question verify this fix in next KG2 build
#1322 by chunyuma was closed Apr 26, 2021
5
The curies with prefix HMDB in kg2.5.2 are all converted to the curies with prefix PUBCHEM.COMPOUND in kg2.5.2c bug kg2c
#1321 by chunyuma was closed Apr 29, 2021
@edeutsch
4
Some new 'biolink:Gene' curies in KG2.5.2 have already been withdrawn by HGNC or NCBI kg2
#1319 by chunyuma was closed May 17, 2021
@kvarforl
3
Some 'biolink:ChemicalSubstance' nodes in KG2.5.2 don't have full name kg2 question
#1296 by chunyuma was closed Mar 16, 2021
5
Some gene curies are missing in KG2.5.1 bug kg2 sar-look Marks an issue that Steve needs to examine
#1260 by chunyuma was closed Feb 12, 2021
4
A list of examples for improving NodeSynonymizer conflation node synonymizer
#1252 by chunyuma was closed Feb 2, 2022
@edeutsch @chunyuma @amykglen
4
ProTip! Find all open issues with in progress development work with linked:pr.