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Issues list

Create table of number of reads retained per sample at each step
#128 opened Jun 22, 2024 by lukenoaa updated Jul 1, 2024
3
Tourmaline initial set-up in v2
#134 opened Jul 1, 2024 by ksilnoaa updated Jul 1, 2024
1
Installing multiqc with Rosetta running
#127 opened Jun 16, 2024 by lukenoaa updated Jun 16, 2024
User-provided file path for reference database/classifier
#126 opened Apr 26, 2024 by lukenoaa updated Apr 26, 2024
Tourmaline 2.0 mega-issue
#125 opened Apr 23, 2024 by lukenoaa updated Apr 23, 2024
Add rescript qiime plugin to Tourmaline Docker
#124 opened Apr 11, 2024 by ksilnoaa updated Apr 11, 2024
Check for metadata beta_group_column prior to diversity step, not at beginning
#123 opened Mar 26, 2024 by ksilnoaa updated Mar 26, 2024
Check comments/instructions about filtering
#119 opened Mar 5, 2024 by lukenoaa updated Mar 5, 2024
Documentation updates
#118 opened Feb 5, 2024 by lukenoaa updated Feb 5, 2024
Add code guidance to export outputs to phyloseq
#116 opened Nov 15, 2023 by ksilnoaa updated Nov 15, 2023
Make the diversity step optional enhancement New feature or request
#115 opened Nov 15, 2023 by ksilnoaa updated Nov 15, 2023
Update qiime2 osx/linux install instructions
#114 opened Oct 25, 2023 by ksilnoaa updated Oct 25, 2023
Generate taxonomy information that is separated by taxonomic rank
#113 opened Sep 13, 2023 by ksilnoaa updated Sep 13, 2023
@ksilnoaa
Relate config file with AOML-MIMARKS metadata terms enhancement New feature or request
#112 opened Sep 12, 2023 by ksilnoaa updated Sep 12, 2023
Update init from existing repo script
#111 opened Aug 22, 2023 by ksilnoaa updated Aug 22, 2023
Report: add how taxonomy was generated enhancement New feature or request
#91 opened Mar 15, 2023 by lukenoaa updated May 30, 2023
2
Provide conda environments as YAML files enhancement New feature or request
#86 opened Mar 15, 2023 by lukenoaa updated May 17, 2023
@rckarns8
1
Add utility scrips to check that primers/adapters removed enhancement New feature or request
#90 opened Mar 15, 2023 by lukenoaa updated May 3, 2023
2
Add support for fragment insertion using SEPP enhancement New feature or request
#56 opened Mar 12, 2021 by lukenoaa updated Mar 15, 2023
Update detect_amplicon_locus.py with more primers enhancement New feature or request
#54 opened Mar 12, 2021 by lukenoaa updated Mar 15, 2023
Add generic taxonomy assignment using GenBank nt enhancement New feature or request
#52 opened Mar 12, 2021 by lukenoaa updated Mar 15, 2023
Travis, dependencies, and continuous integration tests (not unit tests) enhancement New feature or request
#93 opened Mar 15, 2023 by lukenoaa updated Mar 15, 2023
Create Singularity container enhancement New feature or request
#87 opened Mar 15, 2023 by lukenoaa updated Mar 15, 2023
Versioning to allow for new versions (major/minor updates) enhancement New feature or request
#85 opened Mar 14, 2023 by lukenoaa updated Mar 15, 2023
Feature metadata: Add Genbank best hit (MegaBLAST vs. nt) enhancement New feature or request
#96 opened Mar 15, 2023 by lukenoaa updated Mar 15, 2023
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