Use compressed fastq test data

davebx · Nov 27, 2020 · 1a556c0 · 1a556c0
1 parent 5da69d4
commit 1a556c0
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Showing 3 changed files with 2 additions and 2,402 deletions.
diff --git a/tools/flair/flair_collapse.xml b/tools/flair/flair_collapse.xml
@@ -106,7 +106,7 @@ $additional_options.trustends
 	<tests>
 		<test expect_num_outputs="3">
 			<param name="input_query" ftype="bed" value="flair_all_corrected.bed" />
-			<param name="input_reads" ftype="fastq" value="chrM.fastq" />
+			<param name="input_reads" ftype="fastq.gz" value="chrM.fastq.gz" />
 			<param name="ref_selector_genome" value="history" />
 			<param name="reffile" ftype="fasta" value="chrM.fa" />
 			<param name="input_gtf" ftype="gtf" value="UCSC_Main_on_Human_knownGene_region_chrM.gtf" />
@@ -118,7 +118,7 @@ $additional_options.trustends
 		<!-- Test with cached genome -->
 		<test expect_num_outputs="3">
 			<param name="input_query" ftype="bed" value="flair_all_corrected.bed" />
-			<param name="input_reads" ftype="fastq" value="chrM.fastq" />
+			<param name="input_reads" ftype="fastq.gz" value="chrM.fastq.gz" />
 			<param name="ref_selector_genome" value="cached" />
 			<param name="reffile" value="chrM" />
 			<param name="input_gtf" ftype="gtf" value="UCSC_Main_on_Human_knownGene_region_chrM.gtf" />