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wm75

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Commits on Jan 4, 2022

• Add new genome annotation data manager and first tool using its data (galaxyproject#4300)

  wm75

  committedJan 4, 2022
  339a6c1

Commits on Nov 27, 2021

• Fix samtools wrappers to work with fasta.gz refs (galaxyproject#4164)

  wm75

  committedNov 27, 2021
  c5ded42

Commits on Oct 5, 2021

• Make bealign parallelism configurable (galaxyproject#3988)

  wm75

  committedOct 5, 2021
  c9002fa

Commits on Sep 22, 2021

• Fix token name

  wm75

  committedSep 22, 2021
  9a4a742

• Update requirements and use token

  

  wm75

  and

  nsoranzo

  committedSep 22, 2021
  b73119e

Commits on Sep 21, 2021

• Update .github/workflows/pr.yaml

  

  wm75

  and

  nsoranzo

  committedSep 21, 2021
  49ac293

• Prevent cancelling of in-progress toolshed uploads

  wm75

  committedSep 21, 2021
  28eb7f5

Commits on Sep 20, 2021

• Fix breaking typo in proteinortho wrapper (galaxyproject#3969)

  wm75

  committedSep 20, 2021
  5627e0c

Commits on Sep 17, 2021

• Medaka variants enhance (galaxyproject#3958)

  wm75

  committedSep 17, 2021
  86211da

Commits on Aug 20, 2021

• Refine and document regex for amplicon grouping (galaxyproject#3891)

  wm75

  committedAug 20, 2021
  f09d0be

• Address linting issues

  wm75

  committedAug 20, 2021
  33da11e

• Use defined version of bioconductor-tximport

  wm75

  committedAug 20, 2021
  b3c683e

• Use camel-case args for countsFromAbundance option

  wm75

  committedAug 20, 2021
  816be7b

Commits on Jun 25, 2021

• Fix --cs option of minimap2

  wm75

  committedJun 25, 2021
  1be9a6a

Commits on May 19, 2021

• Upgrade ivar to v1.3.1 (galaxyproject#3683)

  wm75

  committedMay 19, 2021
  a5ff06c

Commits on Jan 5, 2021

• Fix linting

  wm75

  committedJan 5, 2021
  2df3b6a

• Bump version

  wm75

  committedJan 5, 2021
  3076c30

• Truncate variant representations safely

  wm75

  committedJan 5, 2021
  dda1ea1

Commits on Dec 18, 2020

• Fix linting

  wm75

  committedDec 18, 2020
  46b0e0e

• Fix to previous changeset and version bump

  wm75

  committedDec 18, 2020
  9ddc3b8

• Handle single and zero variants inputs

  wm75

  committedDec 18, 2020
  33607cd

• Fix labels with more than one extra difference

  wm75

  committedDec 18, 2020
  5a044a6

• Add test for color recycling

  wm75

  committedDec 18, 2020
  df83707

• Guarantee enough gene colors

  wm75

  committedDec 18, 2020
  e52dd72

Commits on Nov 29, 2020

• Enable use of snpsift filter sets

  wm75

  committedNov 29, 2020
  7764475

Commits on Nov 27, 2020

• Remove unnecessary quotes for simpler command line

  wm75

  committedNov 27, 2020
  2b49d69

• Use compressed fastq test data

  wm75

  committedNov 27, 2020
  1a556c0

Commits on Nov 20, 2020

• Flatten test-data structure and avoid symlink

  wm75

  committedNov 20, 2020
  0361777

• Remove unnecessary files

  wm75

  committedNov 20, 2020
  b70690e

• Fix cached genome handling and add tests

  wm75

  committedNov 20, 2020
  296ef2e

Commits on Oct 12, 2020

• Update test file to an actually usable file

  wm75

  committedOct 12, 2020
  d54d42e

• Invert logic of "fixing" primer scheme bed files

  wm75

  committedOct 12, 2020
  b93b0d4

Commits on Oct 9, 2020

• Bump the tool wrapper version

  wm75

  committedOct 9, 2020
  d9bb52d

• Go back to reporting passing variants as vcf.gz

  wm75

  committedOct 9, 2020
  7ef932d

• Use less specific pattern for MarkDuplicates

  wm75

  committedOct 9, 2020
  b64ec0c

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