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@deepomicslab

DeepOmics Lab

Focus on Bioinformatics Toolkits Development
README.md

Hi there 👋

Welcome to DeepomicsLab!

Popular repositories Loading

  1. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 35 7

  2. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 27 9

  3. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 14

  4. SpecHap SpecHap Public

    C++ 11 3

  5. SeCNV SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    Python 10 2

  6. SEAT SEAT Public

    Structure Entropy hieArachy Detection (SEAT) for clustering, ordering, and embedding

    Python 9 2

Repositories

Showing 10 of 53 repositories
  • plasmid_web Public
    deepomicslab/plasmid_web’s past year of commit activity
    Vue 0 0 0 0 Updated Jul 1, 2024
  • plasmid_api Public
    deepomicslab/plasmid_api’s past year of commit activity
    Python 0 0 0 0 Updated Jun 30, 2024
  • crustdb_web Public
    deepomicslab/crustdb_web’s past year of commit activity
    Vue 0 0 0 0 Updated Jun 28, 2024
  • crustdb_api Public
    deepomicslab/crustdb_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 28, 2024
  • GutMeta_analysis_scripts Public
    deepomicslab/GutMeta_analysis_scripts’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jun 27, 2024
  • LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    deepomicslab/LocalHGT’s past year of commit activity
    Python 9 1 0 0 Updated Jun 21, 2024
  • mRNA Public
    deepomicslab/mRNA’s past year of commit activity
    0 0 0 0 Updated Jun 20, 2024
  • SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

    deepomicslab/SpecHLA’s past year of commit activity
    C++ 27 MIT 9 7 0 Updated Jun 14, 2024
  • DeepTAPE-1.0 Public

    DeepTAPE is an advanced deep learning tool designed to provide reference diagnostics for SLE, leveraging pre-trained models and supporting custom training within its framework.

    deepomicslab/DeepTAPE-1.0’s past year of commit activity
    Python 0 0 0 0 Updated May 24, 2024
  • TCRclub Public
    deepomicslab/TCRclub’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 24, 2024
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