rebase and update to 1.5.0

tools/bakta/test-data/NC_002127.1.fna

@@ -18,38 +18,3 @@ TAAAGAACGAAGCCGAGAGCTCAGATAAATCATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTA
 ACTTGAAAACTTCTCGCCATTAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATT
 AAATCAAAAAAAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC
 TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTGCTTCTATTTG
-<<<<<<< HEAD
-<<<<<<< HEAD
-=======
-ATATTTTTTATCTTTTTTCATAATTTCAACCTAGCTACGCCACCATCTATTAATTGGCAAACGGTATCGA
-TGATTGCGATTGATTCTAATTTGTTAATTGTCTTCGTGTCAGCTATTCCTGGTTTCATATGAAACAAACC
-ATGCCTGTTCTCATGCCAGTAAGTGTAGCATTCACACAAAACTTCCGCTATTTCACCATTTATAGTTTCT
-TGGTGTATTTCTCTGATTATATATTTGGGTTTGTTTTCAGTGAAGTATTCGCCAAGGTTCTTTGATGATG
-ATGGATTGCAAACATCATTAAGTATTTGATATATAAAGCCTTCTATGGCTCTTAATGCAGAGAAGCAGTA
-TGTTGAGTAATCTTCCATTTCGACATCTATTTTTTTCATTATTAGCGAGCATGATAGCTGTTTTTTGATA
-TCTTCATGGATTTTATCGATGCTTTTTGGTAGTTTGCTATGCAACTCGGACTCAATAGTTTCTTTTTTTA
-TGTCAACATTAAATTCTTTATTTTTTTGTTCGACAATCTCTTTCATGTTTAGTATTGAGCACATGAAATC
-GTTAATCAAACTCGCGATTTGAAGGTATTTTCCTTGGAATTGAATAGAGCCGCGCTTGTAAATTTTTGCC
-CTGACCCTGTCACCATTGCTGGTGGTCATAATATATTGGTGTTTACAATTAGGATCGTTATTATTATCTT
-CTGTTATTGTTATCCCCTCTTCAGAAAGAAATTCAAATAGATTTGCCCTGTCATCATCACTGAATTTTGG
-AATGGTGTATTCAAAGTTCTTTGTGTCTGAATACAAACAGTTTTCTTTTATAATCAAGGCGATTTCATCA
-AAGTAAGTGTTATTTTGCCCAGACGCTCTTCCGATAGTGGTATTTCCGCCTGATGGCATTAGTTTTATTA
-AGAAGTCTATTCCTTTATATGTGCCAGATATGTGAGTTTCTCTTTCGTTTTTTACATTAGAGGAATAGTT
-TGTGACGCCATTCTGCGTCAGAGCAGACTCAATCTTGTCAATATTGATATTTAGTGCTTTAAACGGGTTC
-TGTGCCATTGGGTCAATCCGTTGTTTTTTTTGAATATGTACAGATCTTGTTTTTTTGTCAACGGAATAGC
-TGTTCGTTGACTTGATAGACCGATTGATTCATCATCTCATAAATAAAGAAAAACCACCGCTACCAACGGT
-GGTTTTCTCAAGGTTCGCTGAGCTACCAACTCTTTGAACCAAGGTAACTGGCTTGGAGGAGCGCAGTCAC
-CAAAATCTGTTCTTTCAGTTTAGCCTTAACAGGTGCATAACTTCAAGACAAACTCCTCTAAATCAGTTAC
-CAATGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTTACCGGATAA
-GGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAA
-CTGAGATACCAACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATC
-CGGTAAGTGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCGGGGGGAAACGCCTGGTATCTTTA
-TAGTCCTGTCGGGTTTCGCCACCTCTGGCTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGC
-CTATGGAAAAACGCCTGCGGTGCTGGCTTCTTCCGGTGCTTTGCTTTTTGCTCACATGTTCTTTCCGGCT
-TTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGACACCGCTCGCCGCAGTCGAA
-CGACCGAGCGTAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCTTATGTGACATTTTCTCCTTACGCT
-CTGTTGTGCCGTTCGGCATCCTGCCCTGAGCGTTATATCTCTGTGCTATTTTCTACTTCAAAGCGTGTCT
-GTATGCTGTTCTGGAG
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
->>>>>>> 57d22d2f3 (change file for size test)

tools/bakta/test-data/TEST_1/TEST_1.embl

@@ -1,12 +1,4 @@
-<<<<<<< HEAD
-<<<<<<< HEAD
 ID   contig_1; ; circular; DNA; ; PRO; 1330 BP.
-=======
-ID   contig_1; ; circular; DNA; ; PRO; 3306 BP.
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
-ID   contig_1; ; circular; DNA; ; PRO; 1330 BP.
->>>>>>> 57d22d2f3 (change file for size test)
 XX
 AC   contig_1;
 XX
@@ -22,35 +14,11 @@ CC   DOI: 10.1099/mgen.0.000685
 CC   URL: github.com/oschwengers/bakta
 CC   
 CC   ##Genome Annotation Summary:##
-<<<<<<< HEAD
-<<<<<<< HEAD
-<<<<<<< HEAD
-<<<<<<< HEAD
-CC   Annotation Date                :: 08/22/2022, 13:06:54
-=======
-CC   Annotation Date                :: 09/15/2022, 14:55:34
->>>>>>> 65589374f (update bakta version from 1.4.2 to 1.5.0 and change the galaxy tool version)
+CC   Annotation Date                :: 09/16/2022, 07:31:59
 CC   Annotation Pipeline            :: Bakta
 CC   Annotation Software version    ::  v1.5.0
 CC   Annotation Database version    ::  v4.0
 CC   CDSs                           ::     2
-=======
-CC   Annotation Date                :: 08/17/2022, 09:35:24
-CC   Annotation Pipeline            :: Bakta
-CC   Annotation Software version    ::  v1.4.2
-CC   Annotation Database version    ::  v3.0
-CC   CDSs                           ::     3
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
-CC   Annotation Date                :: 08/17/2022, 13:02:04
-=======
-CC   Annotation Date                :: 08/22/2022, 13:06:54
->>>>>>> 94b977830 (Add a checkbox for skip options)
-CC   Annotation Pipeline            :: Bakta
-CC   Annotation Software version    ::  v1.4.2
-CC   Annotation Database version    ::  v3.0
-CC   CDSs                           ::     2
->>>>>>> 57d22d2f3 (change file for size test)
 CC   tRNAs                          ::     0
 CC   tmRNAs                         ::     0
 CC   rRNAs                          ::     0
@@ -64,8 +32,6 @@ CC   pseudogenes                    ::     0
 XX
 FH   Key             Location/Qualifiers
 FH
-<<<<<<< HEAD
-<<<<<<< HEAD
 FT   source          1..1330
 FT                   /mol_type="genomic DNA"
 FT                   /plasmid="unnamed1"
@@ -96,45 +62,6 @@ FT                   /transl_table=11
 FT                   /inference="ab initio prediction:Prodigal:2.6"
 XX
 SQ   Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
-=======
-FT   source          1..3306
-=======
-FT   source          1..1330
->>>>>>> 57d22d2f3 (change file for size test)
-FT                   /mol_type="genomic DNA"
-FT                   /plasmid="unnamed1"
-FT   gene            413..736
-FT                   /locus_tag="IHHALP_00005"
-FT   CDS             413..736
-FT                   /product="hypothetical protein"
-FT                   /locus_tag="IHHALP_00005"
-FT                   /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
-FT                   AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
-FT                   MAD"
-FT                   /codon_start=1
-FT                   /transl_table=11
-FT                   /protein_id="gnl|Bakta|IHHALP_00005"
-FT                   /inference="ab initio prediction:Prodigal:2.6"
-FT   gene            complement(join(971..1330,1..141))
-FT                   /locus_tag="IHHALP_00010"
-FT   CDS             complement(join(971..1330,1..141))
-FT                   /product="hypothetical protein"
-FT                   /locus_tag="IHHALP_00010"
-FT                   /translation="MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
-FT                   EEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDR
-FT                   YVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKG
-FT                   IPI"
-FT                   /codon_start=1
-FT                   /transl_table=11
-FT                   /protein_id="gnl|Bakta|IHHALP_00010"
-FT                   /inference="ab initio prediction:Prodigal:2.6"
-XX
-<<<<<<< HEAD
-SQ   Sequence 3306 BP; 797 A; 692 C; 743 G; 1074 T; 0 other;
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
-SQ   Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
->>>>>>> 57d22d2f3 (change file for size test)
      ttcttctgcg agttcgtgca gcttctcaca catggtggcc tgctcgtcag catcgagtgc        60
      gtccagtttt tcgagcagcg tcaggctctg gctttttatg aatcccgcca tgttgagtgc       120
      agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgtcgtg       180
@@ -157,46 +84,5 @@ SQ   Sequence 1330 BP; 330 A; 291 C; 310 G; 399 T; 0 other;
      taaatgacgt atagacgtaa cgatcttttt ttccaccgtt aggaattatt aaatcaaaaa      1200
      aaacatcacc cttgcttttc tttttcttca agtcggattc gatttttgag aaaaattcgc      1260
      tcgggctata aatatcagta gcatagacaa taaataaagt tttatcttta ttttttattg      1320
-<<<<<<< HEAD
-<<<<<<< HEAD
-     cttctatttg                                                             1330
-=======
-     cttctatttg atatttttta tcttttttca taatttcaac ctagctacgc caccatctat      1380
-     taattggcaa acggtatcga tgattgcgat tgattctaat ttgttaattg tcttcgtgtc      1440
-     agctattcct ggtttcatat gaaacaaacc atgcctgttc tcatgccagt aagtgtagca      1500
-     ttcacacaaa acttccgcta tttcaccatt tatagtttct tggtgtattt ctctgattat      1560
-     atatttgggt ttgttttcag tgaagtattc gccaaggttc tttgatgatg atggattgca      1620
-     aacatcatta agtatttgat atataaagcc ttctatggct cttaatgcag agaagcagta      1680
-     tgttgagtaa tcttccattt cgacatctat ttttttcatt attagcgagc atgatagctg      1740
-     ttttttgata tcttcatgga ttttatcgat gctttttggt agtttgctat gcaactcgga      1800
-     ctcaatagtt tcttttttta tgtcaacatt aaattcttta tttttttgtt cgacaatctc      1860
-     tttcatgttt agtattgagc acatgaaatc gttaatcaaa ctcgcgattt gaaggtattt      1920
-     tccttggaat tgaatagagc cgcgcttgta aatttttgcc ctgaccctgt caccattgct      1980
-     ggtggtcata atatattggt gtttacaatt aggatcgtta ttattatctt ctgttattgt      2040
-     tatcccctct tcagaaagaa attcaaatag atttgccctg tcatcatcac tgaattttgg      2100
-     aatggtgtat tcaaagttct ttgtgtctga atacaaacag ttttctttta taatcaaggc      2160
-     gatttcatca aagtaagtgt tattttgccc agacgctctt ccgatagtgg tatttccgcc      2220
-     tgatggcatt agttttatta agaagtctat tcctttatat gtgccagata tgtgagtttc      2280
-     tctttcgttt tttacattag aggaatagtt tgtgacgcca ttctgcgtca gagcagactc      2340
-     aatcttgtca atattgatat ttagtgcttt aaacgggttc tgtgccattg ggtcaatccg      2400
-     ttgttttttt tgaatatgta cagatcttgt ttttttgtca acggaatagc tgttcgttga      2460
-     cttgatagac cgattgattc atcatctcat aaataaagaa aaaccaccgc taccaacggt      2520
-     ggttttctca aggttcgctg agctaccaac tctttgaacc aaggtaactg gcttggagga      2580
-     gcgcagtcac caaaatctgt tctttcagtt tagccttaac aggtgcataa cttcaagaca      2640
-     aactcctcta aatcagttac caatggctgc tgccagtggc gataagtcgt gtcttaccgg      2700
-     gttggactca agacgatagt taccggataa ggcgcagcgg tcgggctgaa cggggggttc      2760
-     gtgcacacag cccagcttgg agcgaacgac ctacaccgaa ctgagatacc aacagcgtga      2820
-     gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg gacaggtatc cggtaagtgg      2880
-     cagggtcgga acaggagagc gcacgaggga gcttccgggg ggaaacgcct ggtatcttta      2940
-     tagtcctgtc gggtttcgcc acctctggct tgagcgtcga tttttgtgat gctcgtcagg      3000
-     ggggcggagc ctatggaaaa acgcctgcgg tgctggcttc ttccggtgct ttgctttttg      3060
-     ctcacatgtt ctttccggct ttatcccctg attctgtgga taaccgtatt accgcctttg      3120
-     agtgagctga caccgctcgc cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg      3180
-     aagcggaaga gcgccttatg tgacattttc tccttacgct ctgttgtgcc gttcggcatc      3240
-     ctgccctgag cgttatatct ctgtgctatt ttctacttca aagcgtgtct gtatgctgtt      3300
-     ctggag                                                                 3306
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
      cttctatttg                                                             1330
->>>>>>> 57d22d2f3 (change file for size test)
 //

tools/bakta/test-data/TEST_1/TEST_1.faa

@@ -1,19 +1,4 @@
-<<<<<<< HEAD
-<<<<<<< HEAD
-=======
->>>>>>> 57d22d2f3 (change file for size test)
 >IHHALP_00005 hypothetical protein
 MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD
 >IHHALP_00010 hypothetical protein
 MNKQQQTALNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELAEEQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
-<<<<<<< HEAD
-=======
->DOGAIA_00005 hypothetical protein
-SSASSCSFSHMVACSSASSASSFSSSVRLWLFMNPAMLSAVCCCLFIFLFSPFCLSSASCDYIAHHFSTVLPPVFCRRTFQSDNTVTAKKQQCFVGNSNLQTGQDVQLLYRAYMHAITITLVRASPRHPMSDTEPCFMTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRAAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRLMAD
->DOGAIA_00010 hypothetical protein
-MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKKSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNFDKINVNLLSKATSFALKKGIPI
->DOGAIA_00015 hypothetical protein
-MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYKGIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDRANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIASLINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSLIMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREIHQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGGVARLKL
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
->>>>>>> 57d22d2f3 (change file for size test)

tools/bakta/test-data/TEST_1/TEST_1.ffn

@@ -1,19 +1,4 @@
-<<<<<<< HEAD
-<<<<<<< HEAD
-=======
->>>>>>> 57d22d2f3 (change file for size test)
 >IHHALP_00005 hypothetical protein
 ATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG
 >IHHALP_00010 hypothetical protein
 ATGAACAAGCAGCAGCAAACTGCACTCAACATGGCGGGATTCATAAAAAGCCAGAGCCTGACGCTGCTCGAAAAACTGGACGCACTCGATGCTGACGAGCAGGCCACCATGTGTGAGAAGCTGCACGAACTCGCAGAAGAACAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA
-<<<<<<< HEAD
-=======
->DOGAIA_00005 hypothetical protein
-TCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGCAGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTGTGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATTTCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTTGCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTACCCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGAAGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGGCTTATGGCAGATTAG
->DOGAIA_00010 hypothetical protein
-ATGAAAAAAGATAAAAAATATCAAATAGAAGCAATAAAAAATAAAGATAAAACTTTATTTATTGTCTATGCTACTGATATTTATAGCCCGAGCGAATTTTTCTCAAAAATCGAATCCGACTTGAAGAAAAAGAAAAGCAAGGGTGATGTTTTTTTTGATTTAATAATTCCTAACGGTGGAAAAAAAGATCGTTACGTCTATACGTCATTTAATGGCGAGAAGTTTTCAAGTTACACATTAAACAAAGTTACGAAAACTGATGAATATAATGATTTATCTGAGCTCTCGGCTTCGTTCTTTAAAAAAAACTTTGATAAGATCAACGTAAACCTTCTATCCAAAGCCACATCATTTGCTTTGAAAAAAGGCATTCCAATATAA
->DOGAIA_00015 hypothetical protein
-ATGGCACAGAACCCGTTTAAAGCACTAAATATCAATATTGACAAGATTGAGTCTGCTCTGACGCAGAATGGCGTCACAAACTATTCCTCTAATGTAAAAAACGAAAGAGAAACTCACATATCTGGCACATATAAAGGAATAGACTTCTTAATAAAACTAATGCCATCAGGCGGAAATACCACTATCGGAAGAGCGTCTGGGCAAAATAACACTTACTTTGATGAAATCGCCTTGATTATAAAAGAAAACTGTTTGTATTCAGACACAAAGAACTTTGAATACACCATTCCAAAATTCAGTGATGATGACAGGGCAAATCTATTTGAATTTCTTTCTGAAGAGGGGATAACAATAACAGAAGATAATAATAACGATCCTAATTGTAAACACCAATATATTATGACCACCAGCAATGGTGACAGGGTCAGGGCAAAAATTTACAAGCGCGGCTCTATTCAATTCCAAGGAAAATACCTTCAAATCGCGAGTTTGATTAACGATTTCATGTGCTCAATACTAAACATGAAAGAGATTGTCGAACAAAAAAATAAAGAATTTAATGTTGACATAAAAAAAGAAACTATTGAGTCCGAGTTGCATAGCAAACTACCAAAAAGCATCGATAAAATCCATGAAGATATCAAAAAACAGCTATCATGCTCGCTAATAATGAAAAAAATAGATGTCGAAATGGAAGATTACTCAACATACTGCTTCTCTGCATTAAGAGCCATAGAAGGCTTTATATATCAAATACTTAATGATGTTTGCAATCCATCATCATCAAAGAACCTTGGCGAATACTTCACTGAAAACAAACCCAAATATATAATCAGAGAAATACACCAAGAAACTATAAATGGTGAAATAGCGGAAGTTTTGTGTGAATGCTACACTTACTGGCATGAGAACAGGCATGGTTTGTTTCATATGAAACCAGGAATAGCTGACACGAAGACAATTAACAAATTAGAATCAATCGCAATCATCGATACCGTTTGCCAATTAATAGATGGTGGCGTAGCTAGGTTGAAATTATGA
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
->>>>>>> 57d22d2f3 (change file for size test)

tools/bakta/test-data/TEST_1/TEST_1.fna

@@ -21,45 +21,4 @@ CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT
 TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA
 AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC
 TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG
-<<<<<<< HEAD
-<<<<<<< HEAD
 CTTCTATTTG
-=======
-CTTCTATTTGATATTTTTTATCTTTTTTCATAATTTCAACCTAGCTACGCCACCATCTAT
-TAATTGGCAAACGGTATCGATGATTGCGATTGATTCTAATTTGTTAATTGTCTTCGTGTC
-AGCTATTCCTGGTTTCATATGAAACAAACCATGCCTGTTCTCATGCCAGTAAGTGTAGCA
-TTCACACAAAACTTCCGCTATTTCACCATTTATAGTTTCTTGGTGTATTTCTCTGATTAT
-ATATTTGGGTTTGTTTTCAGTGAAGTATTCGCCAAGGTTCTTTGATGATGATGGATTGCA
-AACATCATTAAGTATTTGATATATAAAGCCTTCTATGGCTCTTAATGCAGAGAAGCAGTA
-TGTTGAGTAATCTTCCATTTCGACATCTATTTTTTTCATTATTAGCGAGCATGATAGCTG
-TTTTTTGATATCTTCATGGATTTTATCGATGCTTTTTGGTAGTTTGCTATGCAACTCGGA
-CTCAATAGTTTCTTTTTTTATGTCAACATTAAATTCTTTATTTTTTTGTTCGACAATCTC
-TTTCATGTTTAGTATTGAGCACATGAAATCGTTAATCAAACTCGCGATTTGAAGGTATTT
-TCCTTGGAATTGAATAGAGCCGCGCTTGTAAATTTTTGCCCTGACCCTGTCACCATTGCT
-GGTGGTCATAATATATTGGTGTTTACAATTAGGATCGTTATTATTATCTTCTGTTATTGT
-TATCCCCTCTTCAGAAAGAAATTCAAATAGATTTGCCCTGTCATCATCACTGAATTTTGG
-AATGGTGTATTCAAAGTTCTTTGTGTCTGAATACAAACAGTTTTCTTTTATAATCAAGGC
-GATTTCATCAAAGTAAGTGTTATTTTGCCCAGACGCTCTTCCGATAGTGGTATTTCCGCC
-TGATGGCATTAGTTTTATTAAGAAGTCTATTCCTTTATATGTGCCAGATATGTGAGTTTC
-TCTTTCGTTTTTTACATTAGAGGAATAGTTTGTGACGCCATTCTGCGTCAGAGCAGACTC
-AATCTTGTCAATATTGATATTTAGTGCTTTAAACGGGTTCTGTGCCATTGGGTCAATCCG
-TTGTTTTTTTTGAATATGTACAGATCTTGTTTTTTTGTCAACGGAATAGCTGTTCGTTGA
-CTTGATAGACCGATTGATTCATCATCTCATAAATAAAGAAAAACCACCGCTACCAACGGT
-GGTTTTCTCAAGGTTCGCTGAGCTACCAACTCTTTGAACCAAGGTAACTGGCTTGGAGGA
-GCGCAGTCACCAAAATCTGTTCTTTCAGTTTAGCCTTAACAGGTGCATAACTTCAAGACA
-AACTCCTCTAAATCAGTTACCAATGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGG
-GTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTC
-GTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCAACAGCGTGA
-GCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGTGG
-CAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCGGGGGGAAACGCCTGGTATCTTTA
-TAGTCCTGTCGGGTTTCGCCACCTCTGGCTTGAGCGTCGATTTTTGTGATGCTCGTCAGG
-GGGGCGGAGCCTATGGAAAAACGCCTGCGGTGCTGGCTTCTTCCGGTGCTTTGCTTTTTG
-CTCACATGTTCTTTCCGGCTTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTG
-AGTGAGCTGACACCGCTCGCCGCAGTCGAACGACCGAGCGTAGCGAGTCAGTGAGCGAGG
-AAGCGGAAGAGCGCCTTATGTGACATTTTCTCCTTACGCTCTGTTGTGCCGTTCGGCATC
-CTGCCCTGAGCGTTATATCTCTGTGCTATTTTCTACTTCAAAGCGTGTCTGTATGCTGTT
-CTGGAG
->>>>>>> fe1cdf884 (add a new tool BAKTA for genome annotation)
-=======
-CTTCTATTTG
->>>>>>> 57d22d2f3 (change file for size test)