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GATK 4.1.4.0 Dev #27
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d1c5cbc
README.md
4b08f6a
Update to gatk4.1
ab1fccc
Updated forum links in Readme
f2ec9cc
changed ref file VM path to google bucket path
ad695aa
Merge branch 'master' into dev
257166f
updated import link to git tag url
9b0c86f
Merge branch 'master' of github.com:gatk-workflows/gatk4-somatic-snvs…
b814bc3
updated to GATK4.1.1.0
579e36a
minor edits
f722ae4
changed import to dev for pon
1594883
updated filter bias variable
6f58280
updated filter bias variable
92c1abf
updated output variable names, removed artifact_mode from normal-normal
0f38435
changed index to idx
5da3b20
removed artifact_modes
0ecee17
updated import to next release: 2.4.0
1719562
specified gatk version in readme
566fec1
Merge branch 'master' of github.com:gatk-workflows/gatk4-somatic-snvs…
f055dfc
Added Funcotator note to readme
0d31a9f
Update to gatk4.1.2.0
de2d5b3
updated input variable for mutect2
4054e9b
correctin to input vairalbe
d7438e1
correction to output variable
7e22a33
corrected variable name and simplified json
1494e0b
Merge branch 'master' into dev
1026dbe
Merge branch 'master' of github.com:gatk-workflows/gatk4-somatic-snvs…
7dabf3c
renamed input json, removed optional variables from json, updated reg…
8b690cb
removed nio wdl
6c8374d
minor update
9bc5597
Merge branch 'dev' of github.com:gatk-workflows/gatk4-somatic-snvs-in…
17af7dd
removed comments in json because later version of cromwell throws err…
0a5b6bd
corrections to import url for pon wdl
356a43d
mutect2 WDL and pon WDL had inconsistent input names
98316f3
mutect2 WDL and pon WDL had inconsistent input names
694372a
added standard_runtime to pon
c816321
add runtime structs
085ea22
add runtime structs for mergevcf
7cfd447
Update mutect2_pon.wdl
af9cacc
cleaned up input variables
dc46cd8
Update README.md
00328d1
updated docker to 4.1.4.0, updated import url to latest release
bb1c6b2
Merge branch 'dev' of github.com:gatk-workflows/gatk4-somatic-snvs-in…
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updated docker to 4.1.4.0, updated import url to latest release
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@bshifaw I reviewed these inputs as you requested and they are fine.