New year changes (#300)

* update history file * complete * api with llcrearrange * unpin xesmf * unpin binder env * unpin python * add description to module * improve funcs definitions * improve definitions to appear in api * formatting * improve documentation on the transformation api * formatting * formatting * improve description arctic_crown * api * move description to arctic_crown * clarify discontinuity at 180 degrees East * formatting * grammar * add reference * add reference from xarray * documentation * fix spacing * improve docs * improve notes * improve docs * improve text * improve text * include p= `str` as argument - other option from pos_viewer * pass tests now * this is now default * fix failing test * remove unused * create grid to inter lat/lons * remove unnecessary code - prescribed vars * interp angles with non-periodic grid * add rot metrics to mates * correct import * rotate cosine angle * not cos but sine * reverse sign arct face2 * rotate angles * sine correction * rotate angles * flip angles in facets * split if * remove sign change * flip sign sine * apply sign change * rotate arc face 7 sign angle * do not flip sign on cos * remove sign change * rotate vector fields with angles * reverse orientation of vector * fix bug * fix more * fix typo * fix bug * point to right var * again fix var * only apply to multi-dim datavars * use the mate var * keep original assert attrs * use dict for attrs * removed fn, now in llc_rearrange * always drop * make sure proper grid locations * formatting * update docs Co-authored-by: Miguel Jimenez <mjimen17@jhu.edu>
hainegroup · Dec 30, 2022 · 29b38c2 · 29b38c2
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commit 29b38c2
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diff --git a/HISTORY.rst b/HISTORY.rst
@@ -4,6 +4,10 @@
 History
 =======
 
+v0.3.1 (2022-12-14)
+-------------------
+Fix tarball and wheel for new release (PR 295 by `Filipe Fernandes`_).
+
 v0.3.0 (2022-12-12)
 -------------------
 Migrated master to main (PR 239 by `Mattia Almansi`_). Allow oceandataset to have dict-style access to
@@ -27,4 +31,5 @@ Initial release published in the `Journal of Open Source Software`_.
 .. _`Ali Siddiqui`: https://github.com/asiddi24
 .. _`Miguel Jimenez Urias`: https://github.com/Mikejmnez
 .. _`Wenrui Jiang`: https://github.com/MaceKuailv
+.. _`Filipe Fernandes`: https://github.com/ocefpaf
 .. _`Journal of Open Source Software`: https://joss.theoj.org
diff --git a/binder/environment.yml b/binder/environment.yml
@@ -2,7 +2,7 @@ name: rise-environment
 channels:
 - conda-forge
 dependencies:
-- python < 3.10
+- python
 - numpy
 - matplotlib
 - pandas
@@ -12,7 +12,7 @@ dependencies:
 - distributed
 - bottleneck
 - netCDF4
-- xarray < 2022.6
+- xarray
 - cartopy < 0.20
 - esmpy
 - intake-xarray

diff --git a/ci/environment.yml b/ci/environment.yml
@@ -11,7 +11,7 @@ dependencies:
 - intake-xarray
 - geopy
 - xesmf
-- esmf < 8.4
+- esmf
 - xgcm < 0.7
 - Ipython
 - tqdm

diff --git a/docs/.DS_Store b/docs/.DS_Store
diff --git a/docs/api.rst b/docs/api.rst
@@ -217,3 +217,25 @@ Functions
    utils.densjmd95
    utils.densmdjwf
    utils.Coriolis_parameter
+
+LLC-transformation
+==================
+.. autosummary::
+   :toctree: generated/
+
+   llc_rearrange
+
+
+Class
+---------
+.. autosummary::
+   :toctree: generated/
+
+   llc_rearrange.LLCtransformation
+
+.. Classmethod
+.. ---------
+.. .. autosummary::
+..    :toctree: generated/
+
+..    llc_rearrange.LLCtransformation.arctic_crown
diff --git a/oceanspy/compute.py b/oceanspy/compute.py
@@ -89,7 +89,6 @@
     geographical_aligned_velocities=["U_zonal", "V_merid"],
     survey_aligned_velocities=["rot_ang_Vel", "tan_Vel", "ort_Vel"],
     missing_horizontal_spacing=["dxF", "dxV", "dyF", "dyU"],
-    missing_cs_sn=["CS", "SN"],
 )
 
 
@@ -2834,36 +2833,6 @@ def salt_budget(od):
     return _ospy.OceanDataset(ds).dataset
 
 
-def missing_cs_sn(od):
-    """
-    Compute missing grid orientaioon.
-
-    Parameters
-    ----------
-    od: OceanDataset
-        oceandataset used to compute
-
-    Returns
-    -------
-    od: OceanDataset
-        | CS: cosine of the orientation angle
-        | SN: sine of the orientation angle
-    """
-    xc = _np.deg2rad(_np.array(od._ds.XC))
-    yc = _np.deg2rad(_np.array(od._ds.YC))
-    cs = _np.zeros_like(xc)
-    sn = _np.zeros_like(xc)
-    cs[0], sn[0] = _utils.find_cs_sn(yc[0], xc[0], yc[1], xc[1])
-    cs[-1], sn[-1] = _utils.find_cs_sn(yc[-2], xc[-2], yc[-1], xc[-1])
-    cs[1:-1], sn[1:-1] = _utils.find_cs_sn(yc[:-2], xc[:-2], yc[2:], xc[2:])
-    od._ds["CS"] = od._ds["XC"]
-    od._ds["CS"].values = cs
-
-    od._ds["SN"] = od._ds["XC"]
-    od._ds["SN"].values = sn
-    return od
-
-
 def missing_horizontal_spacing(od):
     """
     Compute missing horizontal spacing.