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Issues list

Error in arrange():
#63 by wangsky137 was closed Nov 29, 2022 updated Nov 29, 2022
9
pileup_and_phase error, no allele dataframe produced bug Something isn't working
#67 by teng-gao was closed Nov 28, 2022 updated Nov 28, 2022
[warning] attributes are not identical across measure variables; they will be dropped
#66 by teng-gao was closed Nov 28, 2022 updated Nov 28, 2022
1 normal cell still generates error bug Something isn't working
#65 by teng-gao was closed Nov 28, 2022 updated Nov 28, 2022
Error: ! Can't subset .data outside of a data mask context.
#64 by shenglinmei was closed Nov 23, 2022 updated Nov 23, 2022
Error - 'X' is not a dendrogram when running Numbat example dataset
#18 by sunjh22 was closed Feb 23, 2022 updated Nov 23, 2022
7
Phasing failed with smartseq input.
#61 by wangsky137 was closed Nov 18, 2022 updated Nov 18, 2022
1
No CNV remains after filtering
#58 by petrsh was closed Nov 18, 2022 updated Nov 18, 2022
5
Majority of cells predicted as tumor cells
#59 by petrsh was closed Nov 18, 2022 updated Nov 18, 2022
Error during 2. Iteration [multiplexing]
#49 by Thapeachydude was closed Nov 15, 2022 updated Nov 15, 2022
9
"No CNV remains after filtering" using default settings on 10x lymphoma data
#55 by juliashay was closed Nov 9, 2022 updated Nov 9, 2022
4
Barcodes pileup_and_phase
#57 by petrsh was closed Nov 9, 2022 updated Nov 9, 2022
1
Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 't': subscript out of bounds
#56 by ChengHsiangLu was closed Nov 8, 2022 updated Nov 8, 2022
1
Error during 1. Iteration
#50 by Moxinwu was closed Nov 1, 2022 updated Nov 1, 2022
4
Compatibility with Probe based chemistry
#48 by afvallejo was closed Oct 13, 2022 updated Oct 13, 2022
1
Issue during detect_clonal_loh()
#46 by Thapeachydude was closed Oct 10, 2022 updated Oct 10, 2022
1
CNVs are not detected
#44 by ccruizm was closed Oct 5, 2022 updated Oct 6, 2022
4
run_numbat seems to freeze after starting iteration 1
#20 by liviuspenter was closed Aug 24, 2022 updated Aug 24, 2022
8
Memory usage, tidyverse copy-on-modify and mclapply enhancement New feature or request
#34 by whtns was closed Jul 22, 2022 updated Jul 22, 2022
2
Error: Must group by variables found in .data. * Column seg is not found. * Column sample is not found. When analyzing two samples bound together
#33 by josegarciamanteiga was closed Jul 5, 2022 updated Jul 5, 2022
7
Problem while computing `cnv_state_post = ...[]
#31 by MigleMi was closed May 18, 2022 updated May 18, 2022
3
long vectors not supported yet
#32 by josegarciamanteiga was closed May 17, 2022 updated May 17, 2022
5
Run_numbat unable to successfully get through more than one iteration (no clone_post_x.tsv file generated)
#24 by amr15 was closed May 10, 2022 updated May 10, 2022
6
Roxygen2 documentation
#1 by evanbiederstedt was closed Apr 22, 2022 updated Apr 22, 2022
4
Error during the update tree step
#27 by aranham was closed Apr 15, 2022 updated Apr 15, 2022
5
ProTip! Exclude everything labeled bug with -label:bug.