-
Notifications
You must be signed in to change notification settings - Fork 22
Issues: kharchenkolab/numbat
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
Numbat assigned clone coloring in Panel.png
#191
by quail768
was closed May 30, 2024
updated May 30, 2024
How to generate the plotEmbedding in a numbat object?
#168
by christophechu
was closed May 3, 2024
updated May 3, 2024
Excluding segs_loh causes multiple CNV states for the same segment
tofix
#183
by teng-gao
was closed May 3, 2024
updated May 3, 2024
Running numbat in multiple samples from same patient
#176
by ccruizm
was closed Apr 15, 2024
updated Apr 15, 2024
Error in find_common_diploid(bulks, gamma = gamma, alpha = alpha, ncores = ncores) : Error in smooth_segs(., min_genes = min_genes) :
#163
by whitneyt1
was closed Apr 5, 2024
updated Apr 5, 2024
Error in mutate(., state = run_allele_hmm ... Not a matrix
#177
by whitneyt1
was closed Apr 5, 2024
updated Apr 5, 2024
Error in
mutate()
: ℹ In argument: snp_index = 1:n()
. Caused by error: ! snp_index
must be size 0 or 1, not 2.
#167
by cathalgking
was closed Apr 5, 2024
updated Apr 5, 2024
Better error handling when one of the pileup fails
#179
by teng-gao
was closed Mar 21, 2024
updated Mar 21, 2024
Issues visualizing CNV posterior in tSNE embedding using pagoda
#116
by bobbyshih
was closed Apr 28, 2023
updated Feb 27, 2024
Fail during numbat run : object 'seg' not found
#80
by kokonech
was closed Dec 26, 2022
updated Feb 25, 2024
Cell Ranger Count Default Intronic Counting Impact
#155
by DarioS
was closed Jan 21, 2024
updated Jan 21, 2024
WASHU MM study Bioproject data not available
#149
by juniajvs
was closed Nov 15, 2023
updated Nov 15, 2023
Why is there so much LoH in the mouse data tutorial?
#139
by thomasveith
was closed Oct 26, 2023
updated Oct 26, 2023
Troubleshoot Error - missing files in output directory
#141
by RaghadShu
was closed Oct 6, 2023
updated Oct 6, 2023
Issue about Interpretation of Results of the section Tumor phylogeny
#135
by sunshine1126
was closed Aug 11, 2023
updated Aug 11, 2023
analyse multiple samples from the same individual together to increase power
#129
by rosaranli
was closed Jun 22, 2023
updated Jun 23, 2023
Co-genotype with bulk WGS and scRNA-seq
#106
by DrFengchenzhao
was closed Apr 2, 2023
updated Jun 14, 2023
Error in
mutate()
while running numbat with snRNAseq data generated by Takara SMART-Seq Stranded Kit
#122
by xiaoxinchen2022
was closed Jun 10, 2023
updated Jun 10, 2023
Previous Next
ProTip!
Type g i on any issue or pull request to go back to the issue listing page.