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Issues list

Run only candidate finding algorithm
#8 by marcus1487 was closed Jul 15, 2020
3
consider zooming in on the y-axis for the "ideel plots"
#22 by Kirk3gaard was closed Mar 5, 2021
3
error when parallel deepvariant make_examples
#30 by yingchen69 was closed Jan 6, 2021
3
Substantial loss of sequence when using corrected reads to polish
#38 by ASLeonard was closed Mar 3, 2021
3
Problem with PEPPER Oxford Nanopore variant calling workflow on gpu
#40 by huangnengCSU was closed Mar 20, 2021
3
polish bacterial assemblies microbial assembly polishing
#62 by jagos01 was closed Jun 7, 2021
3
Guppy 5 "sup" models for Nanopore variant calling?
#64 by oneillkza was closed Aug 27, 2021
3
Feature request: reopen #56
#92 by SHuang-Broad was closed Sep 3, 2021
3
container v5 error?
#95 by RichardCorbett was closed Sep 8, 2021
3
ONT var calling pipeline doesn't seem to stop on error
#99 by SHuang-Broad was closed Sep 23, 2021
3
Can PEPPER-Margin-DeepVariant used in nanopore RNA-seq?
#119 by chilampoon was closed Jan 10, 2022
3
Can I use deep-trio in the pepper-margin-deepvariant pipeline?
#140 by jessieshen97 was closed Apr 12, 2022
3
Problem with make_image module
#141 by ghost was closed Apr 21, 2022
3
Running into AttributeError
#148 by sagnikbanerjee15 was closed Jun 16, 2022
3
undefined symbol: libdeflate_free_compressor
#153 by liuzhen51032 was closed Aug 24, 2022
3
RefCall vs. PASS
#160 by yifeng-evo was closed Aug 24, 2022
3
Margin-[E::hts_open_format] Failed to open file .bam
#161 by infotmatician was closed Sep 24, 2022
3
Depth differences between r0.5 and r0.8
#166 by VLeducq was closed Nov 29, 2022
3
DeepVariant Step Error: PythonNext() argument variant is not valid: Dynamic cast failed
#174 by weilu1998 was closed Mar 18, 2023
3
stitching issue
#13 by MichelMoser was closed Sep 25, 2020
4
faidx_adjust_position error for pepper polish
#15 by ascheben was closed Oct 12, 2020
4
Problem with Pepper-deepvariant on gpu
#32 by sonaida was closed Mar 5, 2021
4
Install from source error
#45 by wjj666 was closed Apr 12, 2021
4
problems with singularity
#48 by LiShuhang-gif was closed Apr 15, 2021
4
Make examples/images steps occasionally spike on memory usage
#61 by ASLeonard was closed May 24, 2021
4
ProTip! What’s not been updated in a month: updated:<2024-06-19.