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Issues list

docker GPU version with cuDNN error: CUDNN_STATUS_EXECUTION_FAILED
#71 by masen1991 was closed Sep 4, 2021
26
r0.6 seems stuck
#112 by GuillaumeHolley was closed Jan 5, 2022
25
Error installing via pip
#16 by kushalsuryamohan was closed Nov 2, 2020
17
ERROR: A process in the process pool was terminated abruptly while the future was running or pending.
#103 by sbassi was closed Nov 18, 2021
16
No InDels amplicon data
#55 by husamia was closed May 13, 2021
16
Polishing trio-binned assemblies with PEPPER-Margin-DeepVariant
#52 by ASLeonard was closed May 7, 2021
16
problem when running PEPPER locally
#50 by huangnengCSU was closed May 14, 2021
16
No luck compiling pepper v0.1 under Anaconda3/2020.07
#31 by ponomarevsy was closed Mar 11, 2021
16
Error when running variant calling: "Expected three tokens in header line, got 2"
#67 by kvg was closed Jun 11, 2021
15
No module named pepper.pepper
#53 by mrmrwinter was closed May 27, 2021
15
ONNX error while running the test data from quickstart
#28 by yingchen69 was closed Dec 24, 2020
14
RuntimeError: Unable to get link info (addr overflow, addr = 107864, size = 328, eoa = 2048) w/ v0.5
#91 by fbemm was closed Sep 7, 2021
12
PacBio HiFi HG002 chr20 results solved This issue is solved and will have official support in the next release.
#42 by tahashmi was closed Apr 1, 2021
12
Specific chromosome run
#130 by tahashmi was closed Feb 15, 2022
11
Training questions
#123 by GuillaumeHolley was closed Jan 24, 2022
11
PEPPER_VARIANT_OUTPUT_PHASING.vcf missing
#96 by masen1991 was closed Sep 6, 2021
11
how to get the phased vcf?
#84 by RichardCorbett was closed Aug 30, 2021
10
Running PEPPER-Margin-DeepVariant pipeline on CRISPR/Cas9-mediated-enrichment nanopore data
#147 by nsanchezcollantes was closed Jun 17, 2022
9
variants are not called by run_pepper_margin_deepvariant
#137 by Josephhungyi was closed Mar 24, 2022
9
Many unphased variants in amplicon data
#125 by AJTDaedalus was closed Jan 31, 2022
9
HG002 dataset
#104 by GuillaumeHolley was closed Oct 25, 2021
9
Getting phased VCF on CCS/HiFi data
#101 by SHuang-Broad was closed Sep 28, 2021
9
ERROR: Can't determine and Unable to open object (bad local heap signature)
#97 by songbowang125 was closed Sep 23, 2021
9
Request for recipe singularty file
#47 by davidecanevazzi was closed May 13, 2021
9
PEPPER hifi model training problems
#143 by jessieshen97 was closed Jun 16, 2022
8
ProTip! Updated in the last three days: updated:>2024-07-02.