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Issues list

generated haplotagged BAM file
#206 by nikhita-damaraju was closed Apr 25, 2024
Could not read from reference fasta file.
#188 by sinha-shruti was closed May 18, 2023
1
g.vcf
#181 by shinlin77 was closed Mar 13, 2023
1
Calloc issue with docker even after allocating memory - margin polish
#180 by sofiabanu was closed Mar 18, 2023
1
Local PEPPER installation for variant calling
#179 by leonorpalmeira was closed Mar 24, 2023
4
not producing PEPPER_HP_OUTPUT_2.vcf.gz output for sample data pepper polishing (v.04)
#177 by plnspineda was closed Mar 14, 2023
Seq2Seq_atn.py
#176 by ElaheA90 was closed Mar 18, 2023
1
./. GQ=0 in gvcf where I have high coverage as homozygous reference
#175 by aguygarner was closed Mar 18, 2023
1
DeepVariant Step Error: PythonNext() argument variant is not valid: Dynamic cast failed
#174 by weilu1998 was closed Mar 18, 2023
3
issue in running Pepper
#173 by tahashmi was closed Mar 18, 2023
1
Phasing into a single phaseset across targeted region of interest
#172 by smf96 was closed Mar 18, 2023
6
Critical Vulnerabilities in the published Docker image
#171 by rberg2 was closed Oct 3, 2022
2
pysam not working
#170 by Az513 was closed Mar 18, 2023
1
.csi indexing when phasing
#169 by aguygarner was closed Mar 18, 2023
4
ERROR: basic_string::substr
#168 by chilampoon was closed Mar 18, 2023
4
Depth differences between r0.5 and r0.8
#166 by VLeducq was closed Nov 29, 2022
3
optimal GPU type
#164 by COMInterop was closed Mar 18, 2023
1
Setting Guppy version
#163 by vladimirsouza was closed Sep 24, 2022
5
run error on run_deepvariant.py
#162 by windforclouds was closed Aug 16, 2022
Margin-[E::hts_open_format] Failed to open file .bam
#161 by infotmatician was closed Sep 24, 2022
3
RefCall vs. PASS
#160 by yifeng-evo was closed Aug 24, 2022
3
ImportError
#159 by BrendaLee1 was closed Aug 24, 2022
1
Model training data
#158 by mproberts99 was closed Aug 3, 2022
2
No valid VCF entries found!
#157 by infotmatician was closed Jul 30, 2022
4
AD field looks wierd
#156 by Yijun-Tian was closed Jul 8, 2022
5
ProTip! Follow long discussions with comments:>50.