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Issues list

Error when running variant calling: "Expected three tokens in header line, got 2"
#67 by kvg was closed Jun 11, 2021
15 👍 1
consider zooming in on the y-axis for the "ideel plots"
#22 by Kirk3gaard was closed Mar 5, 2021
3
CentOS 7 Install
#9 by carsweshau was closed Jul 1, 2020
7
Pepper expects <output_file>_pepper_polished.fa to already exist
#10 by TimD1 was closed Sep 2, 2020
7
PEPPER-DeepVariant error
#11 by MichelMoser was closed Sep 13, 2020
2
How to train a new model
#12 by yipukangda was closed Oct 22, 2020
8
stitching issue
#13 by MichelMoser was closed Sep 25, 2020
4
faidx_adjust_position error for pepper polish
#15 by ascheben was closed Oct 12, 2020
4
Error installing via pip
#16 by kushalsuryamohan was closed Nov 2, 2020
17
Where can I install dv_models
#17 by YanJiunLiu was closed Oct 29, 2020
2
Is the model using in create consensus reads same as call variant?
#18 by YanJiunLiu was closed Nov 10, 2020
1
"image" doesn't exist error bug Something isn't working
#19 by rahulmohan was closed Dec 7, 2020
7
PEPPER_variant_calling pipeline in shell scripts instead of docker?
#20 by yingchen69 was closed Nov 23, 2020
1
About training models
#6 by macarima was closed Jun 12, 2020
7
Error in Variant Calling Pipeline
#23 by caspargross was closed Nov 26, 2020
2
Install from source wrong
#24 by masen1991 was closed Dec 9, 2020
8
bonito v0.3 model doesn't work
#25 by biorover was closed Dec 21, 2020
2
Bat genome optimal parameters
#26 by desmodus1984 was closed Jan 12, 2021
1
About chicken genome and guppy 4.2.2
#27 by Johnsonzcode was closed Jan 12, 2021
5
ONNX error while running the test data from quickstart
#28 by yingchen69 was closed Dec 24, 2020
14
generated haplotagged BAM file
#206 by nikhita-damaraju was closed Apr 25, 2024
error when parallel deepvariant make_examples
#30 by yingchen69 was closed Jan 6, 2021
3
No luck compiling pepper v0.1 under Anaconda3/2020.07
#31 by ponomarevsy was closed Mar 11, 2021
16
Problem with Pepper-deepvariant on gpu
#32 by sonaida was closed Mar 5, 2021
4
model for bonito v 0.3.1?
#21 by Kirk3gaard was closed Nov 23, 2020
7
ProTip! no:milestone will show everything without a milestone.