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Issues list

Link files should use bgzf block compression enhancement
#8 opened Aug 9, 2015 by noporpoise updated Aug 9, 2015
Add common arg to configure walking: -a,--assembly enhancement
#9 opened Aug 10, 2015 by noporpoise updated Aug 10, 2015
Generate links info for reference sequence enhancement
#12 opened Aug 10, 2015 by noporpoise updated Aug 10, 2015
Reduce peak memory used by thread enhancement
#11 opened Aug 10, 2015 by noporpoise updated Aug 10, 2015
Breakpoint caller should use novel kmers enhancement
#13 opened Aug 10, 2015 by noporpoise updated Aug 10, 2015
Graph format should use JSON header enhancement
#23 opened Sep 22, 2015 by noporpoise updated Sep 22, 2015
New command: query enhancement
#24 opened Sep 22, 2015 by noporpoise updated Sep 22, 2015
Output contigs in GFA format? enhancement
#27 opened Nov 16, 2015 by iqbal-lab updated Jan 20, 2016
2
GFA output should include links as paths enhancement
#20 opened Sep 17, 2015 by noporpoise updated Jan 20, 2016
Output interpretation
#55 opened Mar 20, 2017 by abeu9727 updated May 9, 2017
3
2-color cortex?
#43 opened Oct 21, 2016 by yannickwurm updated Oct 23, 2017
3
Tackle too much variation in a region
#66 opened Feb 5, 2018 by dimitrisarnellos updated Feb 5, 2018
Finding sequences not in the reference genome
#69 opened Jul 5, 2018 by inti updated Jul 5, 2018
Compilations fails: "city.c:405:10: fatal error: 'citycrc.h' file not found"
#76 opened Nov 26, 2018 by jonchang updated Dec 7, 2018
@noporpoise
3
Build log - identifying how many kmers were added from different files
#78 opened Jan 11, 2019 by alexa-hks updated Jan 11, 2019
Assert error during graph cleaning
#79 opened Jan 12, 2019 by lucaptra updated Jan 12, 2019
Bug in mccortex join with --sort option
#80 opened Mar 18, 2019 by winni2k updated Mar 18, 2019
Is it possible to extract kmers in bubbles?
#82 opened Apr 4, 2019 by zeeev updated Apr 6, 2019
5
Is there a way to rename colors?
#83 opened Apr 26, 2019 by winni2k updated Apr 26, 2019
mccortex subgraph behaviour
#87 opened Aug 15, 2019 by izaak-coleman updated Aug 15, 2019
Problem running make
#86 opened Jul 30, 2019 by Tj-Idowu updated Aug 29, 2019
2
Hash table is full
#89 opened Jun 26, 2020 by chatcrawler updated Jun 26, 2020
mccortex unitigs: "Fatal Error: Not enough kmers in hash" or "Fatal Error: Hash table is full"
#90 opened Sep 11, 2020 by karel-brinda updated Sep 11, 2020
2
mccortex unitigs: "Fatal Error: Couldn't read 'Coverages': expected 4; recieved: 0"
#91 opened Sep 11, 2020 by karel-brinda updated Sep 11, 2020
Best practice for large datasets?
#92 opened Feb 4, 2021 by JohnsonStev updated Feb 16, 2021
4
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