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Support v2 auspice JSONs in json_to_tree #432

Merged
merged 1 commit into from
Jan 25, 2020
Merged

Support v2 auspice JSONs in json_to_tree #432

merged 1 commit into from
Jan 25, 2020

Commits on Jan 22, 2020

  1. Support v2 auspice JSONs in json_to_tree 

    Updates the json_to_tree utility to support v2 auspice JSONs which previously
caused the tool to break. This commit minimally modifies the original function
to pull out the tree information from v2 JSONs. The function does not attempt to
maintain the same attribute interface between v1 and v2 JSONs. For example, the
`attr` attribute from v1 JSONs is split into the `node_attrs` and `branch_attrs`
attributes in v2 JSONs and the json_to_tree function does not try to force all
outputs to have a unified `attr` attribute.

This commit also adds a v2 tree and metadata JSON from the Zika tutorial build
to the test data and doctests for the new json_to_tree support for these v2
JSONs.

Closes #428.
    @huddlej
    huddlej committed Jan 22, 2020
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