Merge pull request #6 from nextstrain/add-ci

Add CI GH Action
nextstrain · Jul 25, 2024 · 443b122 · 443b122
2 parents 4d13b6a + a3e4a57
commit 443b122
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diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -0,0 +1,12 @@
+name: CI
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  ci:
+    uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@master
diff --git a/ingest/build-configs/ci/config.yaml b/ingest/build-configs/ci/config.yaml
@@ -0,0 +1,6 @@
+# TODO: If the ingest workflow ever runs too long, we should figure out a way
+# to subset the ingest data. Currently, the CI just runs the default ingest workflow.
+
+# Snakemake requires at least one top level key in a config file, so including
+# a bogus key here that should not be used anywhere in the Snakemake workflow
+bogus_ci_config: "bogus_ci_config"
diff --git a/phylogenetic/build-configs/ci/config.yaml b/phylogenetic/build-configs/ci/config.yaml