Add CI GH Action #6
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Uses a `bogus_ci_config` to satisfy Snakemakes requirement for config file having at least one top level key. Once the ingest is fully automated and runs daily, then we can add example data for just testing the workflow runs as expected.
The phylogenetic workflow is WIP and does not fully run yet. Rather than let CI error, just remove the config.yaml for now.
|
This PR is based on #5 and CI for ingest successfully completed in <2mins |
kimandrews
approved these changes
Jul 25, 2024
1 task
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description of proposed changes
Add CI GH Action workflow to test the ingest workflow.
Removes the phylogenetic CI config since the workflow is still WIP and doesn't actually run yet.
Related issue(s)
Prompted by #4
Checklist