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Whitespace cleanup from pre-commit [#9]
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genehack committed May 29, 2024
1 parent 3c6b27d commit 72ebaab
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Showing 2 changed files with 0 additions and 5 deletions.
2 changes: 0 additions & 2 deletions ingest/config/defaults.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -16,10 +16,8 @@ oc43:
hku1:
ncbi_taxon_id: "290028"
annotations: "config/hku1/annotations.tsv"

# Optional fields to add to the NCBI Datasets output
ncbi_dataset_fields: []

# Config parameters related to the curate pipeline, shared by all viruses
curate:
# URL pointed to public generalized geolocation rules
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3 changes: 0 additions & 3 deletions phylogenetic/config/defaults.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,6 @@
annotate_phylogeny:
inference: "joint"
columns: "country"

nl63:
reference: "config/nl63/reference.fasta"
genemap: "config/nl63/genemap.gff"
Expand All @@ -58,7 +57,6 @@ nl63:
annotate_phylogeny:
inference: "joint"
columns: "country"

oc43:
reference: "config/oc43/reference.fasta"
genemap: "config/oc43/genemap.gff"
Expand All @@ -77,7 +75,6 @@ oc43:
annotate_phylogeny:
inference: "joint"
columns: "country"

hku1:
reference: "config/hku1/reference.fasta"
genemap: "config/hku1/genemap.gff"
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