Add cucim.kit.cumed plugin with skeleton #129
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gigony
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| ImageFormat() = default; | ||
| ~ImageFormat() = default; | ||
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| bool add_interfaces(cucim::io::format::IImageFormat* image_formats); |
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Is it possible to use a reference here? Could the variable be const?
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Thanks for pointing it out!
Updated to use const variable.
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| // Dynamically allocate memory for json_data (need to be freed manually); | ||
| const std::string& json_str = std::string{}; | ||
| char* json_data_ptr = static_cast<char*>(cucim_malloc(json_str.size() + 1)); |
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Is there a corresponding free somewhere? Would it be possible to use RAII to handle this allocation?
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Yes, it is at the destructor of CuImage class.
Lines 236 to 241 in 95e4483
I have created an issue to handle general resource handling issues and will follow up on the improvement through the issue.
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| TEST_CASE("Verify file", "[test_basic.cpp]") | ||
| { | ||
| REQUIRE(1 == 1); |
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Were we wanting to add more here?
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Currently, it is just a placeholder to implement unit tests for cumed plugin.
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@ajschmidt8 It seems that it has an issue with cuda11.5 (same for #128) 19:01:04 ++ python -c 'import cucim'
19:01:05 ci/gpu/build.sh: line 91: 1680 Segmentation fault (core dumped) python -c 'import cucim'
19:01:05 Build step 'Execute shell' marked build as failure
19:01:08 Recording test resultsIs there a known issue regarding this? Update: It seems so. I can see failures in other projects - rapidsai/cudf#9562 |
Yes, |
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Thanks @ajschmidt8 for the confirmation! |
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@gpucibot merge |
This change adds a skeleton plugin named
cucim.kit.cumedfor medical-related file loaders and image operations (e.g., .mhd file format support).The image loader to use is determined by
is_valid()method implemented in each plugin and CuImage object holds the reference to the image format descriptor (cucim::io::format::ImageFormatDesc*).cuCIM treats
cucim.kit.cuslideandcucim.kit.cumedplugins as built-in plugins, and it would support custom plugins in the future (by refactoring the framework code, according to the recent update of Carbonite (minimal) SDK library and use the library as it is).