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Pull requests: biocommons/biocommons.seqrepo

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Pull requests list

make SeqAliasDB.commit() respect to self._writeable
#12 by chenliangomc was merged Jul 15, 2017 Loading…
Commit only when self._writeable is True
#13 by chenliangomc was merged Jul 15, 2017 Loading…
1
A few modifications to work with python 2.7
#15 by andreasprlic was closed Jul 3, 2017 Loading…
1
Add two Debian packages to enable Docker build
#25 by lawrlee was merged Sep 7, 2017 Loading…
set data dir path via environment variable
#9 by chenliangomc was merged Dec 10, 2016 Loading…
Update for dockerfile
#26 by andreas-invitae was closed Sep 27, 2018 Loading…
1
Removing Biopython dependency
#36 by afrubin was closed Oct 21, 2018 Loading…
6
add 2 tests to test_fastadir.py
#52 by Deena-B was closed Mar 6, 2019 Loading…
3
Changed 3.6 to 3 in python.pythonPath in .vscode/settings.json
#53 by Deena-B was closed Mar 6, 2019 Loading…
2
#45: Added doctest for commonpath absolute/relative path(s)
#49 by decareano was merged Jan 20, 2019 Loading…
1
#45: Improve coverage of init function in cli module and fix key in formatted exception message
#48 by ispashayev was merged Jan 20, 2019 Loading…
1
#45: Added doctest for commonpath empty list case
#47 by reece was merged Jan 17, 2019 Loading…
1
Expose check_same_thread option for sqlite connection
#46 by jamespeacock was merged Jan 16, 2019 Loading…
4
removing assert line in 'test_fabgz.py' for temp directory prefix
#51 by decareano was closed Feb 13, 2019 Loading…
2
Use custom commonpath implementation on Python 3.4
#56 by alexhenrie was merged Apr 10, 2019 Loading…
3
Add 2 tests to test_fastadir.py
#54 by Deena-B was merged Mar 16, 2019 Loading…
4
FIx documentation URLs
#68 by sampearl was merged Aug 28, 2019 Loading…
2
Ncbi fasta header fix
#69 by andreasprlic was merged Sep 2, 2019 Loading…
1
SQLite usage is changed to more Python DB API 2.0 compatible.
#63 by teemuvesala was merged Jul 22, 2019 Loading…
2
#64 Updating fasta header parsing to support new NCBI fasta header.
#65 by andreasprlic was merged Jul 22, 2019 Loading…
6
Cache SQLite DB lookups for seqinfo and seqid to speed up future queries
#96 by joesolly was merged Jun 14, 2021 Loading…
10
Create cqa.yml
#100 by reece was merged Dec 7, 2021 Loading…
1
suggestions for some changes to the existing github actions
#101 by bmrobin was closed Aug 25, 2022 Loading…
3
Working on adding support for dataproxy
#98 by andreasprlic was merged Nov 17, 2021 Loading…
@reece
20
Update README.md
#102 by holtgrewe was merged Apr 19, 2023 Loading…
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