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Pull requests: biocommons/biocommons.seqrepo

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Pull requests list

build!: move ipython/repl functionality to optional dependency group
#163 by jsstevenson was merged Jul 5, 2024 Loading… updated Jul 5, 2024
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chore: add git ignore revs file
#165 by jsstevenson was merged Jun 24, 2024 Loading… updated Jun 24, 2024
style: format with Ruff
#158 by jsstevenson was merged Jun 21, 2024 Loading… updated Jun 21, 2024
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refactor: use Python 3 stdlib instead of six
#164 by jsstevenson was merged Jun 13, 2024 Loading… updated Jun 13, 2024
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fix: properly initialize file handler
#160 by jsstevenson was merged Jun 13, 2024 Loading… updated Jun 13, 2024
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docs: add note about commit()
#157 by jsstevenson was merged Jun 5, 2024 Loading… updated Jun 5, 2024
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chore: fix license classifier
#154 by jsstevenson was merged Jun 5, 2024 Loading… updated Jun 5, 2024
fix: remove unneeded __future__ imports
#153 by jsstevenson was merged Jun 5, 2024 Loading… updated Jun 5, 2024
refactor: use importlib instead of pkg_resources
#149 by jsstevenson was merged Jun 3, 2024 Loading… updated Jun 3, 2024
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docs: add description of store()
#152 by jsstevenson was merged May 31, 2024 Loading… updated May 31, 2024
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fix: resolve type errors/add type annotations
#151 by jsstevenson was merged May 30, 2024 Loading… updated May 30, 2024
14
Do not preserve permissions when pulling an instance with rsync
#144 by theferrit32 was merged Apr 21, 2024 Loading… updated Apr 21, 2024
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@theferrit32
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style: apply style black, flake8, isort (#108)
#109 by holtgrewe was closed Mar 28, 2024 Loading… updated Mar 28, 2024 0.7
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ci: update GitHub actions CI and add release-please (#104)
#107 by holtgrewe was closed Mar 28, 2024 Loading… updated Mar 28, 2024 0.7
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style: apply updated style configs from template
#141 by jsstevenson was merged Mar 28, 2024 Loading… updated Mar 28, 2024
fix: finish migrating from setup.cfg to pyproject.toml in order to install seqrepo cli
#139 by reece was merged Feb 20, 2024 Loading… updated Feb 20, 2024
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closes #6: cli: add pull command to pull latest instance from public site
#7 by reece was merged Sep 10, 2016 Loading… updated Feb 19, 2024
build: fix dynamic dependencies for newer setuptools versions
#133 by jsstevenson was merged Jan 19, 2024 Loading… updated Jan 29, 2024
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feat(130): Introduces SEQREPO_FD_CACHE_MAXSIZE env var
#131 by kazmiekr was merged Jan 23, 2024 Loading… updated Jan 23, 2024
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112 make fastadir thread safe
#118 by reece was merged Nov 13, 2023 Loading… updated Nov 13, 2023
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Thread safety for FastaDir file handle cache
#117 by theferrit32 was merged Nov 13, 2023 Loading… updated Nov 13, 2023
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Update README to support OSX users
#122 by dylan-myome was merged Sep 18, 2023 Loading… updated Sep 18, 2023
Citation file
#123 by afrubin was merged Sep 18, 2023 Loading… updated Sep 18, 2023
#119: migrate to biocommons.example template
#120 by reece was merged Sep 17, 2023 Loading… updated Sep 17, 2023
docs: proposing to use default issue templates (#110)
#111 by holtgrewe was merged Sep 9, 2023 Loading… updated Sep 9, 2023
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