AB Faux Alignment
Creates a meaningless alignment out of a collection of sequences. Gaps are added into each sequence at random to bring each to the appropriate length.
Optional. Specify how long the final alignment should be. If the value is less than the length of the longest sequence, than the longest sequence length will be used.
LOCUS Mle-Panxα3 200 aa UNA 02-JAN-2015
DEFINITION cDNA - ML036514a.
ACCESSION Mle-Panxα3
VERSION Mle-Panxα3
KEYWORDS .
SOURCE
ORGANISM .
.
FEATURES Location/Qualifiers
CDS order(1..50,51..111,112..152,153..183,184..200)
/created_by="User"
/label="ML036514a"
/modified_by="User"
TMD1 29..49
TMD2 132..152
ORIGIN
1 mlllgslgti knlsifkdls lddwldqmnr tfmflllcfm gtivavsqyt gkniscdgft
61 kfgedfsqdy cwtqglytik eaydlpesqi pypgiipenv pacrehalkn ggkivcpped
121 qvkpltrarh lwyqwipfyf wviapvfylp ymfvkrmgld rmkpllkims dyyhcttetp
181 seeiivkcad wvynsivdrl
//
LOCUS Mle-Panxα4 170 aa UNA 02-JAN-2015
DEFINITION cDNA and genomic - ML129317a.
ACCESSION Mle-Panxα4
VERSION Mle-Panxα4
KEYWORDS .
SOURCE
ORGANISM .
.
FEATURES Location/Qualifiers
TMD1 28..48
TMD2 131..151
ORIGIN
1 mviellagyk glspfkdatv ddswdqinrc yvfiamvvmg avttmrqysg tliacdgftk
61 fhpqfaedyc wsigmytvre aydlpssmva ypgvipwdmp acvprllkng trtkcgsekd
121 vmpsekiyhl wyqwasfyfw ivailyyapy imfkqlggge ykplikllcl
//
LOCUS Mle-Panxα6 180 aa UNA 02-JAN-2015
DEFINITION cDNA - ML25993a.
ACCESSION Mle-Panxα6
VERSION Mle-Panxα6
KEYWORDS .
SOURCE
ORGANISM .
.
FEATURES Location/Qualifiers
CDS order(1..42,43..92,93..125,126..171,172..180)
/created_by="User"
/label="ML25993"
/modified_by="User"
TMD1 28..48
TMD2 131..151
ORIGIN
1 mlleilanfk gatpfkeivl ddkwdqinrc ymfllcvifg tvvtfrqytg giiacdgltk
61 fsaafaedyc wtqglytike aydivdnslp ypgllpedap pclsrrlvsg griecppadl
121 yleptrvhht wyqwipfyfw visiafigpy ivykqlgvne lkpilamlhn pvdgddvtkd
//
LOCUS Mle-Panxα5 190 aa UNA 02-JAN-2015
DEFINITION cDNA - ML223536a.
ACCESSION Mle-Panxα5
VERSION Mle-Panxα5
KEYWORDS .
SOURCE
ORGANISM .
.
FEATURES Location/Qualifiers
CDS order(1..49,50..94,95..135,136..190)
/created_by="User"
/label="ML223536a"
/modified_by="User"
TMD1 28..48
TMD2 133..153
ORIGIN
1 miywvwavfk rmapfkvvtl ddrwdqmnrs fmmpltmsfa ylidygiiag stikctgfed
61 sfrseafvde ycwtqgiytl reaydlentk ipypgiipeg fpncmpyerw dgmkvecpke
121 eqylkptrvy hlyyqhiqly fwlvctlfyl pymvgiclgf nytkplinll hnpltrdeee
181 lealldkaar
//
Passing in no 'length' argument will produce an alignment as long as the longest input sequence (200, in this case).
$: alb Mnemiopsis_Panxs.gb -fa
LOCUS Mle-Panxα3 200 aa UNK 01-JAN-1980
DEFINITION Mle-Panxα3 cDNA - ML036514a.
ACCESSION Mle-Panxα3
VERSION Mle-Panxα3
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
CDS order(1..50,51..111,112..152,153..183,184..200)
/created_by="User"
/label="ML036514a"
/modified_by="User"
TMD1 29..49
TMD2 132..152
ORIGIN
1 mlllgslgti knlsifkdls lddwldqmnr tfmflllcfm gtivavsqyt gkniscdgft
61 kfgedfsqdy cwtqglytik eaydlpesqi pypgiipenv pacrehalkn ggkivcpped
121 qvkpltrarh lwyqwipfyf wviapvfylp ymfvkrmgld rmkpllkims dyyhcttetp
181 seeiivkcad wvynsivdrl
//
LOCUS Mle-Panxα4 200 aa UNK 01-JAN-1980
DEFINITION Mle-Panxα4 cDNA and genomic - ML129317a.
ACCESSION Mle-Panxα4
VERSION Mle-Panxα4
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
TMD1 34..58
TMD2 152..178
ORIGIN
1 mv-iellag- yk-glsp-fk -dat-vddsw dqinrc-yvf iamvv-mgav t-tmr-qysg
61 tli-acdgf- tkfh-pqfae dycwsi-gmy tvreay--dl pssm-vay-p g-vipwdmpa
121 cvprll-kng trtkcgsekd v-mpsekiyh lwyqwasf-y f-wiv--ail yyap-y-imf
181 k-qlg-ggey kplik-llcl
//
LOCUS Mle-Panxα6 200 aa UNK 01-JAN-1980
DEFINITION Mle-Panxα6 cDNA - ML25993a.
ACCESSION Mle-Panxα6
VERSION Mle-Panxα6
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
CDS order(1..50,51..105,106..138,139..190,192..200)
/created_by="User"
/label="ML25993"
/modified_by="User"
TMD1 35..56
TMD2 145..168
ORIGIN
1 mlleil-a-n fk-ga-t-pf kei-vlddkw d-qinrcym- fllcvifgtv vtfrqytggi
61 -iacdgltkf -sa-afaedy -cwtqglyti keay-divdn slpypgllpe dappclsrrl
121 vsggriecpp adlyleptrv hh-tw-yqwi pfyfwvisia -figpy-ivy kqlgvnelk-
181 pilaml-hnp -vdgddvtkd
//
LOCUS Mle-Panxα5 200 aa UNK 01-JAN-1980
DEFINITION Mle-Panxα5 cDNA - ML223536a.
ACCESSION Mle-Panxα5
VERSION Mle-Panxα5
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
CDS order(1..51,52..98,99..140,141..200)
/created_by="User"
/label="ML223536a"
/modified_by="User"
TMD1 29..50
TMD2 138..159
ORIGIN
1 miywvwavfk rmapfkvvt- lddrwdqmnr sfmmp-ltms faylidygii agstikctgf
61 edsf-rseaf vdeycwt-qg iytlreaydl entkipypgi ipegfpncmp yerwd-gmkv
121 ecpkeeqylk ptrvyhlyyq hiq-lyfwlv ctlfylpymv giclgfnytk plinll--h-
181 npltrdeeel -ealldkaar
//
Passing in a 'length' argument. The -o flag is also being set in this example to change the output format to PHYLIP.
$: alb Mnemiopsis_Panxs.gb -fa 235 -o phylip
4 235
Mle-Panxα3 MLL-LGS-LG TIKN-LSI-F KDLS-LDDWL DQM-NRTFMF LL-LCFMGTI
Mle-Panxα4 MV-I---EL- L-AGYKGLSP FK-D-A-T-- VDDSWD-QI- NR-CY-VF--
Mle-Panxα6 MLLEI-LANF K----GATPF K---EIV-LD --DK-W-DQ- INRC-YMFLL
Mle-Panxα5 MI-YW-VW-A VFKR-M-A-- -PFK-VVTL- D-DR-WD-QM NRSFMMPLTM
VA-VSQYTG- KN-ISCDGF- TK-FG-EDFS Q-DYCWTQGL YTIKEAYD-L
IAMVV-M-GA VTTMRQY-SG T---LIACDG -FTKFHP-QF --AEDYCWSI
CVIF-GTV-V T--FRQYTG- GIIA-CDGLT KFSAAFAEDY --C-W-TQGL
SFAYLIDYGI IAGSTIKC-T G-F-EDSFRS -EAFVDEYCW -TQGIY-TLR
PESQ-I-PYP GIIPENVPAC REHAL-KNG- G-KI-VCPPE DQVKPLTRA-
G-MY-TV--R -EA-YDLP-S -SMVAY--PG VIPWDMPAC- VPRL--LKNG
Y--TIKEA-Y DIVD-NS-L- PYPGL--LP- EDA-PPC-LS -RRLVSG-GR
EAYDLENTKI P---YPGI-I PEGFPNC-MP -YER--WDG- -MKVEC--PK
RHLWY---QW IPFYFWVIAP VFY-LPYMFV KRM-GLDRMK P-LLKIMSD-
-TRTKC-GSE KDV--MPSEK IYH-LW-Y-- -QWASF-YF- WIVAI-LYYA
IEC-PPADLY L-E--PTRVH HTWYQWIPFY FWVIS-I--A -F-IGP-YIV
EEQYLKPTRV -YH-LYYQ-H IQLY-FWLVC TLFYLPYMV- GICLGFNYT-
-YYHCTTE-- TPSEEIIVKC AD-WV-YNS- IVDRL
PYI---M--F KQ-LG--GG- EYKP---LIK LLC-L
-YKQLGVN-E LKPILAMLHN PVDGD---D- V-TKD
-KPLIN--L- LHNP-LTR-D EEELEAL-LD KA-AR
