SB List feature

--list_features, -lf

Description

Output a tab separated list of all sequence annotations, including the location of each feature and any qualifiers that may be attached.

Example

Input file: TMDs.gb

LOCUS       Mle-Panxα10A             430 aa                     UNA 02-JAN-2015
DEFINITION  cDNA - ML32831a-1.
ACCESSION   Mle-Panxα10A
VERSION     Mle-Panxα10A
KEYWORDS    .
SOURCE      
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     CDS             1..430
                     /created_by="User"
                     /label="ML32831a"
                     /modified_by="User"
     TMD1            40..60
     TMD2            160..180
     TMD3            244..264
     TMD4            331..361
ORIGIN
        1 mrlsekstsh dckacitrsh nedcarrwgi tiddgwdqln rsfmfgllvv mgttvtvrqy
       61 tgsviscdgf kkfgstfaed ycwtqgqytv legydqpnqn ipcplpaafa pypgifpeel
      121 shclvgarka gqsedlingt rlkcpdpdql lsptrishlw yqwvpfyfwl aaaaffmpyl
      181 lyknfgigdi kplvrflhnp vesdqelkkm tdkaatwlfy kfdlymseqs llasltnkhg
      241 lglsvvfvki lyaavsfgcf lltadmfsig dfktygsewi nklklednla teekdklfpk
      301 mvacevkrwg asgieeeqgm cvlapnvinq ylflilwfcl vfvmfcnivs ifaslikllf
      361 tygsyrrlls taflrddsai khmyfnvgss grlilhvlan ntaprvfedi lltlapkliq
      421 rklrakdyd*
//
LOCUS       Mle-Panxα1               447 aa                     UNA 02-JAN-2015
DEFINITION  cDNA - ML078817.
ACCESSION   Mle-Panxα1
VERSION     Mle-Panxα1
KEYWORDS    .
SOURCE      
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     CDS             1..447
                     /created_by="User"
                     /label="ML078817"
     TMD1            31..51
     TMD2            125..145
     TMD3            209..229
     TMD4            291..321
ORIGIN
        1 mywifeicqe ikraqscrkf aidgpfdwtn riimptlmvi ccflqtftfm fgsniscigf
       61 eklernfvee ycwtqgiyts kaaynmplht pypgiapcvp eydpvtqkyw lpcgveeedk
      121 ayhlwyqwvp fyflavavgy ylpflilkgs klhqvkplit ylmnqrnlet dpnhlvgkls
      181 hwifrqlvys rfaatstirm ywhdwglvll vcsvkilylt vslihlfata kmfhignwft
      241 ygimfarrsn shtthvkdvf fpkmvackie twsftgknhl hgmcvlalnv mnqylflivw
      301 yvnviiifln sisciytivk fcspnivhhr ivnssslddh hdftrmfgyv gpsgriilak
      361 msehmpgyml kqvakkvtek idieneknrg raptikftkv ngqpselarq plmhlnalml
      421 gmvpqnlpep kiqniqrsqk kvrflv*
//
LOCUS       Mle-Panxα8               417 aa                     UNA 02-JAN-2015
DEFINITION  cDNA - ML07312a.
ACCESSION   Mle-Panxα8
VERSION     Mle-Panxα8
KEYWORDS    .
SOURCE      
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     CDS             1..417
                     /Innexin_02=""
                     /created_by="User"
                     /label="Innexin 02"
                     /modified_by="User"
     TMD1            28..48
     TMD2            131..151
     TMD3            214..234
     TMD4            300..330
ORIGIN
        1 mvlevlalfp rlapfkvitl ddvwdqwnrs fmfimtvlfg sivtirsytg sviecdgflk
       61 vpvefakdyc wtqgiytlre gydyhssllp ypgvfpedap gcldkvldng grvicpmdkk
      121 yrkyqrvyhs wyqftafyfw tascafflpy mmfkffgmgd lkpvismlhn pvetaeeldm
      181 ltkkaarwly vrvhayihtd qyygkrvekh llffsimltk scyllfsvll fwltekmfhi
      241 gsffsygvdw aaeepepged yktliqdklf pkmasceikr wgttgieeeq gmcvlaanvi
      301 nqylflifwg gmvvtiivnv lsvlialsnl cfiqgayrnl lataflrdep ayseiwrksg
      361 tsgrvilqli aknvnpxxxx xraeragela evggevrclv ercfslnrph iphlvk*
//

Usage example

$: sb TMDs.fa -lf

Output

#### Mle-Panxα10A ####
CDS
	Location:
		0-430
	Qualifiers:
		created_by: User
		label: ML32831a
		modified_by: User
TMD1
	Location:
		39-60
TMD2
	Location:
		159-180
TMD3
	Location:
		243-264
TMD4
	Location:
		330-361

#### Mle-Panxα1 ####
CDS
	Location:
		0-447
	Qualifiers:
		created_by: User
		label: ML078817
TMD1
	Location:
		30-51
TMD2
	Location:
		124-145
TMD3
	Location:
		208-229
TMD4
	Location:
		290-321

#### Mle-Panxα8 ####
CDS
	Location:
		0-417
	Qualifiers:
		Innexin_02: 
		created_by: User
		label: Innexin 02
		modified_by: User
TMD1
	Location:
		27-48
TMD2
	Location:
		130-151
TMD3
	Location:
		213-234
TMD4
	Location:
		299-330