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27 Open 64 Closed
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Issues list

Pipeline test occasionally fails bug question
#18 by noporpoise was closed Sep 17, 2015
1
Add links to papers in CITING section
#35 by tseemann was closed Apr 26, 2016
1
Missing colon in --seq2 example in Wiki
#34 by tseemann was closed Apr 16, 2016
1
Overlapping paired-end reads
#33 by tseemann was closed Apr 17, 2016
3
Make a new pre-release
#32 by tseemann was closed Apr 15, 2016
1
bcftools doesn't compile with gcc 4.9 on MacOSX
#31 by rec3141 was closed Mar 16, 2017
3
server occasionally returns edges that aren't valid ints
#29 by Phelimb was closed Jan 20, 2016
1
server occasionally returns invalid JSON
#28 by Phelimb was closed Jan 20, 2016
2
missing tab means Bandage can't read mccortex GFA
#26 by iqbal-lab was closed Nov 15, 2015
4
Generate plots and a report from pipeline enhancement
#25 by noporpoise was closed Nov 15, 2015
Buffered graph loading enhancement
#22 by noporpoise was closed Sep 20, 2015
ctx63 clean can't read "magic word"
#1 by er432 was closed Jun 6, 2014
1
VCF annotation/filtering
#19 by noporpoise was closed Sep 29, 2015
Script availability in conda recipe
#94 by mbhall88 was closed Feb 1, 2022
6
mmap failing for large populations bug
#17 by noporpoise was closed Sep 14, 2015
Write a server enhancement
#16 by noporpoise was closed Sep 8, 2015
4
Genotype a VCF enhancement
#15 by noporpoise was closed Nov 9, 2015
1
Loading interleaved files assumes first read is first bug
#14 by noporpoise was closed Aug 10, 2015
Bubble caller: don't report serial bubbles enhancement
#10 by noporpoise was closed Nov 9, 2015
1
Fatal error in pipeline
#7 by MathGon was closed Aug 5, 2015
2
Variant calling with paired-end reads fails
#5 by rene-rex was closed Sep 2, 2014
3
Bug: input file names containing colons not accepted
#4 by jeromekelleher was closed Jul 7, 2014
1
Feature request: add verbosity control
#3 by jeromekelleher was closed Jul 7, 2014
@noporpoise
2
Contig failing on ctx63 when path colors above 0 used
#2 by er432 was closed Jul 7, 2014
1
pipeline should have option to leave out inferedges
#21 by noporpoise was closed Sep 20, 2015
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