satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Simple Features for R
Accurate sample inference from amplicon data with single nucleotide resolution
Code and file management for the TUM Master's course "Introduction to Bayesian Data Analysis" (Summer 24)
Repository for Programming Assignment 2 for R Programming on Coursera
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Extra CI for Apache Arrow
🎓 A collection of interactive courses for the swirl R package.
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Spatial omics analysis toolbox
dplyr: A grammar of data manipulation
renv: Project environments for R.
An implementation of the Grammar of Graphics in R
R toolkit for the analysis of single-cell chromatin data
Survival Analysis and Visualization
Community-provided extensions to Seurat
'ggplot2' Based Publication Ready Plots
Easy interactive web applications with R
Read flat files (csv, tsv, fwf) into R
Make Complex Heatmaps
An interactive graphing library for R