Skip to content

Pull requests: biocommons/biocommons.seqrepo

New pull request New
Clear current search query, filters, and sorts
2 Open 51 Closed
2 Open 51 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

docs: add description of store()
#152 by jsstevenson was merged May 31, 2024 Loading…
1
style: format with Ruff
#158 by jsstevenson was merged Jun 21, 2024 Loading…
1
build!: move ipython/repl functionality to optional dependency group
#163 by jsstevenson was merged Jul 5, 2024 Loading…
1
1
Changed 3.6 to 3 in python.pythonPath in .vscode/settings.json
#53 by Deena-B was closed Mar 6, 2019 Loading…
2
removing assert line in 'test_fabgz.py' for temp directory prefix
#51 by decareano was closed Feb 13, 2019 Loading…
2
FIx documentation URLs
#68 by sampearl was merged Aug 28, 2019 Loading…
2
SQLite usage is changed to more Python DB API 2.0 compatible.
#63 by teemuvesala was merged Jul 22, 2019 Loading…
2
112 make fastadir thread safe
#118 by reece was merged Nov 13, 2023 Loading…
2
refactor: use importlib instead of pkg_resources
#149 by jsstevenson was merged Jun 3, 2024 Loading…
2
build: require python>=3.10
#155 by jsstevenson was merged Jul 11, 2024 Loading…
2
add 2 tests to test_fastadir.py
#52 by Deena-B was closed Mar 6, 2019 Loading…
3
Use custom commonpath implementation on Python 3.4
#56 by alexhenrie was merged Apr 10, 2019 Loading…
3
suggestions for some changes to the existing github actions
#101 by bmrobin was closed Aug 25, 2022 Loading…
3
Thread safety for FastaDir file handle cache
#117 by theferrit32 was merged Nov 13, 2023 Loading…
3
build: fix dynamic dependencies for newer setuptools versions
#133 by jsstevenson was merged Jan 19, 2024 Loading…
3
fix: finish migrating from setup.cfg to pyproject.toml in order to install seqrepo cli
#139 by reece was merged Feb 20, 2024 Loading…
1
3
ci: update GitHub actions CI and add release-please (#104)
#107 by holtgrewe was closed Mar 28, 2024 Loading… 0.7
3
Expose check_same_thread option for sqlite connection
#46 by jamespeacock was merged Jan 16, 2019 Loading…
4
Add 2 tests to test_fastadir.py
#54 by Deena-B was merged Mar 16, 2019 Loading…
4
feat(130): Introduces SEQREPO_FD_CACHE_MAXSIZE env var
#131 by kazmiekr was merged Jan 23, 2024 Loading…
1
4
style: apply style black, flake8, isort (#108)
#109 by holtgrewe was closed Mar 28, 2024 Loading… 0.7
4
Removing Biopython dependency
#36 by afrubin was closed Oct 21, 2018 Loading…
6
#64 Updating fasta header parsing to support new NCBI fasta header.
#65 by andreasprlic was merged Jul 22, 2019 Loading…
6
Cache SQLite DB lookups for seqinfo and seqid to speed up future queries
#96 by joesolly was merged Jun 14, 2021 Loading…
10
fix: resolve type errors/add type annotations
#151 by jsstevenson was merged May 30, 2024 Loading…
14
ProTip! Follow long discussions with comments:>50.